myRT

myRT report for GCA_013149685.1_ASM1314968v1

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Seq: JABFUV010000001.1 Clostridium saccharobutylicum strain DJ115 Ga0423267_01, whole genome shotgun sequence (5110162 bp)
Overview 1 RT 1: 24589-29183 bp 2 RT 2: 2670072-2677981 bp 3 RT 3: 2792300-2801018 bp 4 RT 4: 3432288-3435450 bp Neighborhood of RT #1 [24589, 29485] plantaricin plantaricin RVT_N RVT-GII GIIM rve_2 PHA02517 DDE_Tnp_1 Neighborhood of RT #2 [2670072, 2677981] UvrD UvrD RVT-Retrons Enpp Neighborhood of RT #3 [2792300, 2801018] Sig70_famx3 DUF1835 DUF3658 RVT-Retrons Neighborhood of RT #4 [3432288, 3435488] RVT-GII RVT-GII DDE_Tnp_1 Feature: gene Location: 24589-24855 bp Feature: domain Description: plantaricin Location: 24610-24853 bp Feature: domain Description: plantaricin Location: 2461 0-24853 bp Feature: gene Location: 24900-25166 bp Feature: domain Description: plantaricin Location: 24921-25164 bp Feature: domain Description: plantaricin Location: 24921 -251 64 bp Feature: gene Location: 25240-26775 bp Feature: RT Description: RVT_N Location: 25312-25555 bp Feature: RT Description: RVT_N Location: 2531 2-25555 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 25600-26260 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 25600-26260 bp Feature: domain Description: GIIM Note: maturase Location: 26311-26548 bp Feature: domain Description: GIIM Note: maturase Location: 2631 1 -26548 bp Feature: domain Description: rve_2 Location: 26692-26767 bp Feature: domain Description: rve_2 Location: 26692-26767 bp Feature: gene Location: 27301-28158 bp Feature: domain Description: PHA02517 Location: 27589-28138 bp Feature: domain Description: PHA0251 7 Location: 27589-281 38 bp Feature: gene Location: 28217-29485 bp Feature: domain Description: DDE_Tnp_1 Location: 28568-29183 bp Feature: domain Description: DDE_Tnp_1 Location: 28568-291 83 bp Feature: gene Location: 2670072-2672639 bp Feature: domain Description: UvrD Location: 2670594-2671722 bp Feature: domain Description: UvrD Location: 2670594-2671 722 bp Feature: domain Description: UvrD Location: 2671899-2672139 bp Feature: domain Description: UvrD Location: 2671 899-26721 39 bp Feature: gene Location: 2672925-2673932 bp Feature: gene Location: 2674144-2675268 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2674360-2674918 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2674360-267491 8 bp Feature: gene Location: 2675570-2676874 bp Feature: domain Description: Enpp Location: 2675588-2676824 bp Feature: domain Description: Enpp Location: 2675588-2676824 bp Feature: gene Location: 2677445-2677981 bp Feature: gene Location: 2792300-2792827 bp Feature: domain Description: Sig70_famx3 Location: 2792306-2792789 bp Feature: domain Description: Sig70_famx3 Location: 2792306-2792789 bp Feature: gene Location: 2793046-2794071 bp Feature: domain Description: DUF1835 Location: 2793061-2793430 bp Feature: domain Description: DUF1 835 Location: 2793061 -2793430 bp Feature: domain Description: DUF3658 Location: 2793520-2793832 bp Feature: domain Description: DUF3658 Location: 2793520-2793832 bp Feature: gene Location: 2794659-2796164 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2795295-2795937 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2795295-2795937 bp Feature: gene Location: 2796161-2797969 bp Feature: gene Location: 2797971-2801018 bp Feature: gene Location: 3432288-3432422 bp Feature: gene Location: 3432890-3433297 bp Feature: gene Location: 3433731-3434369 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3434067-3434250 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3434067-3434250 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3434253-3434358 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3434253-3434358 bp Feature: gene Location: 3434840-3435190 bp Feature: gene Location: 3435282-3435488 bp Feature: domain Description: DDE_Tnp_1 Location: 3435312-3435450 bp Feature: domain Description: DDE_Tnp_1 Location: 343531 2-3435450 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT plantaricin (NF000539), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), rve_2 (pfam13333), PHA02517 (putative transposase OrfB; Reviewed), DDE_Tnp_1 (pfam01609), UvrD (COG0210), RVT-Retrons, Enpp (cd16018)
Sig70_famx3 (TIGR02954), DUF1835 (pfam08874), DUF3658 (pfam12395)