myRT

myRT report for GCA_013149695.1_ASM1314969v1

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Seq: JABFUQ010000001.1 Clostridium saccharobutylicum strain DJ093 Ga0423252_01, whole genome shotgun sequence (3866510 bp)
Overview 1 RT 1: 27609-32203 bp 2 RT 2: 572022-575222 bp 3 RT 3: 1206496-1215176 bp 4 RT 4: 1329532-1336941 bp Neighborhood of RT #1 [27609, 32505] plantaricin plantaricin RVT_N RVT-GII GIIM rve_2 PHA02517 DDE_Tnp_1 Neighborhood of RT #2 [572022, 575222] DDE_Tnp_1 RVT-GII RVT-GII Neighborhood of RT #3 [1206496, 1215214] RVT-Retrons DUF1835 DUF3658 Sig70_famx3 Neighborhood of RT #4 [1329532, 1337441] Enpp RVT-Retrons UvrD UvrD Feature: gene Location: 27609-27875 bp Feature: domain Description: plantaricin Location: 27630-27873 bp Feature: domain Description: plantaricin Location: 27630-27873 bp Feature: gene Location: 27920-28186 bp Feature: domain Description: plantaricin Location: 27941-28184 bp Feature: domain Description: plantaricin Location: 27941 -281 84 bp Feature: gene Location: 28260-29795 bp Feature: RT Description: RVT_N Location: 28332-28575 bp Feature: RT Description: RVT_N Location: 28332-28575 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 28620-29280 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 28620-29280 bp Feature: domain Description: GIIM Note: maturase Location: 29331-29568 bp Feature: domain Description: GIIM Note: maturase Location: 29331 -29568 bp Feature: domain Description: rve_2 Location: 29712-29787 bp Feature: domain Description: rve_2 Location: 2971 2-29787 bp Feature: gene Location: 30321-31178 bp Feature: domain Description: PHA02517 Location: 30609-31158 bp Feature: domain Description: PHA0251 7 Location: 30609-31 1 58 bp Feature: gene Location: 31237-32505 bp Feature: domain Description: DDE_Tnp_1 Location: 31588-32203 bp Feature: domain Description: DDE_Tnp_1 Location: 31 588-32203 bp Feature: gene Location: 572022-572228 bp Feature: domain Description: DDE_Tnp_1 Location: 572052-572190 bp Feature: domain Description: DDE_Tnp_1 Location: 572052-5721 90 bp Feature: gene Location: 572320-572670 bp Feature: gene Location: 573141-573779 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 573477-573660 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 573477-573660 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 573663-573768 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 573663-573768 bp Feature: gene Location: 574207-574620 bp Feature: gene Location: 575088-575222 bp Feature: gene Location: 1206496-1209543 bp Feature: gene Location: 1209545-1211353 bp Feature: gene Location: 1211350-1212855 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1211986-1212628 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 21 1 986-1 21 2628 bp Feature: gene Location: 1213443-1214468 bp Feature: domain Description: DUF1835 Location: 1213458-1213827 bp Feature: domain Description: DUF1 835 Location: 1 21 3458-1 21 3827 bp Feature: domain Description: DUF3658 Location: 1213917-1214229 bp Feature: domain Description: DUF3658 Location: 1 21 391 7-1 21 4229 bp Feature: gene Location: 1214687-1215214 bp Feature: domain Description: Sig70_famx3 Location: 1214693-1215176 bp Feature: domain Description: Sig70_famx3 Location: 1 21 4693-1 21 51 76 bp Feature: gene Location: 1329532-1330068 bp Feature: gene Location: 1330639-1331943 bp Feature: domain Description: Enpp Location: 1330657-1331893 bp Feature: domain Description: Enpp Location: 1 330657-1 331 893 bp Feature: gene Location: 1332245-1333369 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1332461-1333019 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 332461 -1 33301 9 bp Feature: gene Location: 1333581-1334588 bp Feature: gene Location: 1334874-1337441 bp Feature: domain Description: UvrD Location: 1335396-1336524 bp Feature: domain Description: UvrD Location: 1 335396-1 336524 bp Feature: domain Description: UvrD Location: 1336701-1336941 bp Feature: domain Description: UvrD Location: 1 336701 -1 336941 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT plantaricin (NF000539), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), rve_2 (pfam13333), PHA02517 (putative transposase OrfB; Reviewed), DDE_Tnp_1 (pfam01609), RVT-Retrons, DUF1835 (pfam08874), DUF3658 (pfam12395)
Sig70_famx3 (TIGR02954), Enpp (cd16018), UvrD (COG0210)