myRT

myRT report for GCA_013149705.1_ASM1314970v1

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Seq: JABFUO010000001.1 Clostridium saccharobutylicum strain DJ087 Ga0423249_01, whole genome shotgun sequence (5043673 bp)
Overview 1 RT 1: 579970-584564 bp 2 RT 2: 3144805-3152714 bp 3 RT 3: 3267034-3275752 bp 4 RT 4: 3907029-3910191 bp Neighborhood of RT #1 [579970, 584866] plantaricin plantaricin RVT_N RVT-GII GIIM rve_2 PHA02517 DDE_Tnp_1 Neighborhood of RT #2 [3144805, 3152714] UvrD UvrD RVT-Retrons Enpp Neighborhood of RT #3 [3267034, 3275752] Sig70_famx3 DUF1835 DUF3658 RVT-Retrons Neighborhood of RT #4 [3907029, 3910229] RVT-GII RVT-GII DDE_Tnp_1 Feature: gene Location: 579970-580236 bp Feature: domain Description: plantaricin Location: 579991-580234 bp Feature: domain Description: plantaricin Location: 579991 -580234 bp Feature: gene Location: 580281-580547 bp Feature: domain Description: plantaricin Location: 580302-580545 bp Feature: domain Description: plantaricin Location: 580302-580545 bp Feature: gene Location: 580621-582156 bp Feature: RT Description: RVT_N Location: 580693-580936 bp Feature: RT Description: RVT_N Location: 580693-580936 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 580981-581641 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 580981 -581 641 bp Feature: domain Description: GIIM Note: maturase Location: 581692-581929 bp Feature: domain Description: GIIM Note: maturase Location: 581 692-581 929 bp Feature: domain Description: rve_2 Location: 582073-582148 bp Feature: domain Description: rve_2 Location: 582073-5821 48 bp Feature: gene Location: 582682-583539 bp Feature: domain Description: PHA02517 Location: 582970-583519 bp Feature: domain Description: PHA0251 7 Location: 582970-58351 9 bp Feature: gene Location: 583598-584866 bp Feature: domain Description: DDE_Tnp_1 Location: 583949-584564 bp Feature: domain Description: DDE_Tnp_1 Location: 583949-584564 bp Feature: gene Location: 3144805-3147372 bp Feature: domain Description: UvrD Location: 3145327-3146455 bp Feature: domain Description: UvrD Location: 31 45327-31 46455 bp Feature: domain Description: UvrD Location: 3146632-3146872 bp Feature: domain Description: UvrD Location: 31 46632-31 46872 bp Feature: gene Location: 3147658-3148665 bp Feature: gene Location: 3148877-3150001 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3149093-3149651 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 31 49093-31 49651 bp Feature: gene Location: 3150303-3151607 bp Feature: domain Description: Enpp Location: 3150321-3151557 bp Feature: domain Description: Enpp Location: 31 50321 -31 51 557 bp Feature: gene Location: 3152178-3152714 bp Feature: gene Location: 3267034-3267561 bp Feature: domain Description: Sig70_famx3 Location: 3267040-3267523 bp Feature: domain Description: Sig70_famx3 Location: 3267040-3267523 bp Feature: gene Location: 3267780-3268805 bp Feature: domain Description: DUF1835 Location: 3267795-3268164 bp Feature: domain Description: DUF1 835 Location: 3267795-32681 64 bp Feature: domain Description: DUF3658 Location: 3268254-3268566 bp Feature: domain Description: DUF3658 Location: 3268254-3268566 bp Feature: gene Location: 3269393-3270898 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3270029-3270671 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3270029-3270671 bp Feature: gene Location: 3270895-3272703 bp Feature: gene Location: 3272705-3275752 bp Feature: gene Location: 3907029-3907163 bp Feature: gene Location: 3907631-3908038 bp Feature: gene Location: 3908472-3909110 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3908808-3908991 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3908808-3908991 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3908994-3909099 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3908994-3909099 bp Feature: gene Location: 3909581-3909931 bp Feature: gene Location: 3910023-3910229 bp Feature: domain Description: DDE_Tnp_1 Location: 3910053-3910191 bp Feature: domain Description: DDE_Tnp_1 Location: 391 0053-391 01 91 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT plantaricin (NF000539), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), rve_2 (pfam13333), PHA02517 (putative transposase OrfB; Reviewed), DDE_Tnp_1 (pfam01609), UvrD (COG0210), RVT-Retrons, Enpp (cd16018)
Sig70_famx3 (TIGR02954), DUF1835 (pfam08874), DUF3658 (pfam12395)