myRT

myRT report for GCA_013149715.1_ASM1314971v1

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Seq: JABFUJ010000001.1 Clostridium saccharobutylicum strain DJ072 Ga0423238_01, whole genome shotgun sequence (5029504 bp)
Overview 1 RT 1: 2262142-2267036 bp 2 RT 2: 3966281-3969481 bp 3 RT 3: 4600758-4609438 bp 4 RT 4: 4723796-4731205 bp Neighborhood of RT #1 [2262142, 2267038] DDE_Tnp_1 PHA02517 RVT_N RVT-GII GIIM rve_2 plantaricin plantaricin Neighborhood of RT #2 [3966281, 3969481] DDE_Tnp_1 RVT-GII RVT-GII Neighborhood of RT #3 [4600758, 4609476] RVT-Retrons DUF1835 DUF3658 Sig70_famx3 Neighborhood of RT #4 [4723796, 4731705] Enpp RVT-Retrons UvrD UvrD Feature: gene Location: 2262142-2263410 bp Feature: domain Description: DDE_Tnp_1 Location: 2262493-2263108 bp Feature: domain Description: DDE_Tnp_1 Location: 2262493-22631 08 bp Feature: gene Location: 2263469-2264326 bp Feature: domain Description: PHA02517 Location: 2263757-2264306 bp Feature: domain Description: PHA0251 7 Location: 2263757-2264306 bp Feature: gene Location: 2264852-2266387 bp Feature: RT Description: RVT_N Location: 2264924-2265167 bp Feature: RT Description: RVT_N Location: 2264924-22651 67 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2265212-2265872 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 226521 2-2265872 bp Feature: domain Description: GIIM Note: maturase Location: 2265923-2266160 bp Feature: domain Description: GIIM Note: maturase Location: 2265923-22661 60 bp Feature: domain Description: rve_2 Location: 2266304-2266379 bp Feature: domain Description: rve_2 Location: 2266304-2266379 bp Feature: gene Location: 2266461-2266727 bp Feature: domain Description: plantaricin Location: 2266482-2266725 bp Feature: domain Description: plantaricin Location: 2266482-2266725 bp Feature: gene Location: 2266772-2267038 bp Feature: domain Description: plantaricin Location: 2266793-2267036 bp Feature: domain Description: plantaricin Location: 2266793-2267036 bp Feature: gene Location: 3966281-3966487 bp Feature: domain Description: DDE_Tnp_1 Location: 3966311-3966449 bp Feature: domain Description: DDE_Tnp_1 Location: 396631 1 -3966449 bp Feature: gene Location: 3966579-3966929 bp Feature: gene Location: 3967400-3968038 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3967736-3967919 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3967736-396791 9 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3967922-3968027 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3967922-3968027 bp Feature: gene Location: 3968466-3968879 bp Feature: gene Location: 3969347-3969481 bp Feature: gene Location: 4600758-4603805 bp Feature: gene Location: 4603807-4605615 bp Feature: gene Location: 4605612-4607117 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4606248-4606890 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4606248-4606890 bp Feature: gene Location: 4607705-4608730 bp Feature: domain Description: DUF1835 Location: 4607720-4608089 bp Feature: domain Description: DUF1 835 Location: 4607720-4608089 bp Feature: domain Description: DUF3658 Location: 4608179-4608491 bp Feature: domain Description: DUF3658 Location: 46081 79-4608491 bp Feature: gene Location: 4608949-4609476 bp Feature: domain Description: Sig70_famx3 Location: 4608955-4609438 bp Feature: domain Description: Sig70_famx3 Location: 4608955-4609438 bp Feature: gene Location: 4723796-4724332 bp Feature: gene Location: 4724903-4726207 bp Feature: domain Description: Enpp Location: 4724921-4726157 bp Feature: domain Description: Enpp Location: 4724921 -47261 57 bp Feature: gene Location: 4726509-4727633 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4726725-4727283 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4726725-4727283 bp Feature: gene Location: 4727845-4728852 bp Feature: gene Location: 4729138-4731705 bp Feature: domain Description: UvrD Location: 4729660-4730788 bp Feature: domain Description: UvrD Location: 4729660-4730788 bp Feature: domain Description: UvrD Location: 4730965-4731205 bp Feature: domain Description: UvrD Location: 4730965-4731 205 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_1 (pfam01609), PHA02517 (putative transposase OrfB; Reviewed), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), rve_2 (pfam13333), plantaricin (NF000539), RVT-Retrons, DUF1835 (pfam08874), DUF3658 (pfam12395)
Sig70_famx3 (TIGR02954), Enpp (cd16018), UvrD (COG0210)