myRT

myRT report for GCA_013149765.1_ASM1314976v1

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Seq: JABFUW010000001.1 Clostridium saccharobutylicum strain DJ118 Ga0423269_01, whole genome shotgun sequence (2811944 bp)
Overview 1 RT 1: 2524573-2532482 bp 2 RT 2: 2646797-2655515 bp Neighborhood of RT #1 [2524573, 2532482] UvrD UvrD RVT-Retrons Enpp Neighborhood of RT #2 [2646797, 2655515] Sig70_famx3 DUF1835 DUF3658 RVT-Retrons Feature: gene Location: 2524573-2527140 bp Feature: domain Description: UvrD Location: 2525095-2526223 bp Feature: domain Description: UvrD Location: 2525095-2526223 bp Feature: domain Description: UvrD Location: 2526400-2526640 bp Feature: domain Description: UvrD Location: 2526400-2526640 bp Feature: gene Location: 2527426-2528433 bp Feature: gene Location: 2528645-2529769 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2528861-2529419 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2528861 -252941 9 bp Feature: gene Location: 2530071-2531375 bp Feature: domain Description: Enpp Location: 2530089-2531325 bp Feature: domain Description: Enpp Location: 2530089-2531 325 bp Feature: gene Location: 2531946-2532482 bp Feature: gene Location: 2646797-2647324 bp Feature: domain Description: Sig70_famx3 Location: 2646803-2647286 bp Feature: domain Description: Sig70_famx3 Location: 2646803-2647286 bp Feature: gene Location: 2647543-2648568 bp Feature: domain Description: DUF1835 Location: 2647558-2647927 bp Feature: domain Description: DUF1 835 Location: 2647558-2647927 bp Feature: domain Description: DUF3658 Location: 2648017-2648329 bp Feature: domain Description: DUF3658 Location: 264801 7-2648329 bp Feature: gene Location: 2649156-2650661 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2649792-2650434 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2649792-2650434 bp Feature: gene Location: 2650658-2652466 bp Feature: gene Location: 2652468-2655515 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT UvrD (COG0210), RVT-Retrons, Enpp (cd16018), Sig70_famx3 (TIGR02954), DUF1835 (pfam08874), DUF3658 (pfam12395)

Seq: JABFUW010000002.1 Clostridium saccharobutylicum strain DJ118 Ga0423269_02, whole genome shotgun sequence (2163467 bp)
Overview 1 RT 1: 1667947-1671146 bp Neighborhood of RT #1 [1667947, 1671146] DDE_Tnp_1 RVT-GII RVT-GII Feature: gene Location: 1667947-1668153 bp Feature: domain Description: DDE_Tnp_1 Location: 1667977-1668115 bp Feature: domain Description: DDE_Tnp_1 Location: 1667977-1668115 bp Feature: gene Location: 1668298-1668594 bp Feature: gene Location: 1669065-1669703 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1669401-1669584 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1669401-1669584 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1669587-1669692 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1669587-1669692 bp Feature: gene Location: 1670131-1670544 bp Feature: gene Location: 1671012-1671146 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_1 (pfam01609), RVT-GII

Seq: JABFUW010000003.1 Clostridium saccharobutylicum strain DJ118 Ga0423269_03, whole genome shotgun sequence (155292 bp)
Overview 1 RT 1: 112059-116953 bp Neighborhood of RT #1 [112059, 116955] DDE_Tnp_1 PHA02517 RVT_N RVT-GII GIIM rve_2 plantaricin plantaricin Feature: gene Location: 112059-113327 bp Feature: domain Description: DDE_Tnp_1 Location: 112410-113025 bp Feature: domain Description: DDE_Tnp_1 Location: 112410-113 025 bp Feature: gene Location: 113386-114243 bp Feature: domain Description: PHA02517 Location: 113674-114223 bp Feature: domain Description: PHA02517 Location: 113 674-114223 bp Feature: gene Location: 114769-116304 bp Feature: RT Description: RVT_N Location: 114841-115084 bp Feature: RT Description: RVT_N Location: 114841-115084 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 115129-115789 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 115129-115789 bp Feature: domain Description: GIIM Note: maturase Location: 115840-116077 bp Feature: domain Description: GIIM Note: maturase Location: 115840-116077 bp Feature: domain Description: rve_2 Location: 116221-116296 bp Feature: domain Description: rve_2 Location: 116221-116296 bp Feature: gene Location: 116378-116644 bp Feature: domain Description: plantaricin Location: 116399-116642 bp Feature: domain Description: plantaricin Location: 1163 99-116642 bp Feature: gene Location: 116689-116955 bp Feature: domain Description: plantaricin Location: 116710-116953 bp Feature: domain Description: plantaricin Location: 116710-116953 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_1 (pfam01609), PHA02517 (putative transposase OrfB; Reviewed), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), rve_2 (pfam13333), plantaricin (NF000539)