myRT

myRT report for GCA_013149795.1_ASM1314979v1

Download annotations/find similar RTs

Seq: JABFUX010000001.1 Clostridium saccharobutylicum strain DJ178 Ga0423281_01, whole genome shotgun sequence (2281097 bp)
Overview 1 RT 1: 1288582-1291782 bp 2 RT 2: 1923060-1931740 bp 3 RT 3: 2046097-2053506 bp Neighborhood of RT #1 [1288582, 1291782] DDE_Tnp_1 RVT-GII RVT-GII Neighborhood of RT #2 [1923060, 1931778] RVT-Retrons DUF1835 DUF3658 Sig70_famx3 Neighborhood of RT #3 [2046097, 2054006] Enpp RVT-Retrons UvrD UvrD Feature: gene Location: 1288582-1288788 bp Feature: domain Description: DDE_Tnp_1 Location: 1288612-1288750 bp Feature: domain Description: DDE_Tnp_1 Location: 1 28861 2-1 288750 bp Feature: gene Location: 1288880-1289230 bp Feature: gene Location: 1289701-1290339 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1290037-1290220 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 290037-1 290220 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1290223-1290328 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 290223-1 290328 bp Feature: gene Location: 1290767-1291180 bp Feature: gene Location: 1291648-1291782 bp Feature: gene Location: 1923060-1926107 bp Feature: gene Location: 1926109-1927917 bp Feature: gene Location: 1927914-1929419 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1928550-1929192 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 928550-1 9291 92 bp Feature: gene Location: 1930007-1931032 bp Feature: domain Description: DUF1835 Location: 1930022-1930391 bp Feature: domain Description: DUF1 835 Location: 1 930022-1 930391 bp Feature: domain Description: DUF3658 Location: 1930481-1930793 bp Feature: domain Description: DUF3658 Location: 1 930481 -1 930793 bp Feature: gene Location: 1931251-1931778 bp Feature: domain Description: Sig70_famx3 Location: 1931257-1931740 bp Feature: domain Description: Sig70_famx3 Location: 1 931 257-1 931 740 bp Feature: gene Location: 2046097-2046633 bp Feature: gene Location: 2047204-2048508 bp Feature: domain Description: Enpp Location: 2047222-2048458 bp Feature: domain Description: Enpp Location: 2047222-2048458 bp Feature: gene Location: 2048810-2049934 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2049026-2049584 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2049026-2049584 bp Feature: gene Location: 2050146-2051153 bp Feature: gene Location: 2051439-2054006 bp Feature: domain Description: UvrD Location: 2051961-2053089 bp Feature: domain Description: UvrD Location: 2051 961 -2053089 bp Feature: domain Description: UvrD Location: 2053266-2053506 bp Feature: domain Description: UvrD Location: 2053266-2053506 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_1 (pfam01609), RVT-GII, RVT-Retrons, DUF1835 (pfam08874), DUF3658 (pfam12395), Sig70_famx3 (TIGR02954), Enpp (cd16018), UvrD (COG0210)

Seq: JABFUX010000003.1 Clostridium saccharobutylicum strain DJ178 Ga0423281_03, whole genome shotgun sequence (772264 bp)
Overview 1 RT 1: 28568-33162 bp Neighborhood of RT #1 [28568, 33464] plantaricin plantaricin RVT_N RVT-GII GIIM rve_2 PHA02517 DDE_Tnp_1 Feature: gene Location: 28568-28834 bp Feature: domain Description: plantaricin Location: 28589-28832 bp Feature: domain Description: plantaricin Location: 2 8589-2 8832 bp Feature: gene Location: 28879-29145 bp Feature: domain Description: plantaricin Location: 28900-29143 bp Feature: domain Description: plantaricin Location: 2 8900-2 9143 bp Feature: gene Location: 29219-30754 bp Feature: RT Description: RVT_N Location: 29291-29534 bp Feature: RT Description: RVT_N Location: 2 92 91-2 9534 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 29579-30239 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 9579-302 39 bp Feature: domain Description: GIIM Note: maturase Location: 30290-30527 bp Feature: domain Description: GIIM Note: maturase Location: 302 90-3052 7 bp Feature: domain Description: rve_2 Location: 30671-30746 bp Feature: domain Description: rve_2 Location: 30671-30746 bp Feature: gene Location: 31280-32137 bp Feature: domain Description: PHA02517 Location: 31568-32117 bp Feature: domain Description: PHA02 517 Location: 31568-32 117 bp Feature: gene Location: 32196-33464 bp Feature: domain Description: DDE_Tnp_1 Location: 32547-33162 bp Feature: domain Description: DDE_Tnp_1 Location: 32 547-33162 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT plantaricin (NF000539), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), rve_2 (pfam13333), PHA02517 (putative transposase OrfB; Reviewed), DDE_Tnp_1 (pfam01609)