myRT

myRT report for GCA_013150945.1_ASM1315094v1

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Seq: WHSI01000128.1 Shigella flexneri strain 5908.2 NODE_128_length_9685_cov_71.463988, whole genome shotgun sequence (9685 bp)
Overview 1 RT 1: 4249-8991 bp Neighborhood of RT #1 [4249, 9107] DUF905 PRK13732 RVT-GII Intron_maturas2 HNHc DUF1380 Feature: gene Location: 4249-4482 bp Feature: domain Description: DUF905 Location: 4279-4477 bp Feature: domain Description: DUF905 Location: 4279-4477 bp Feature: gene Location: 4540-4980 bp Feature: domain Description: PRK13732 Location: 4546-4978 bp Feature: domain Description: PRK1 3732 Location: 4546-4978 bp Feature: gene Location: 5175-7076 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5442-6273 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5442-6273 bp Feature: domain Description: Intron_maturas2 Location: 6387-6645 bp Feature: domain Description: Intron_maturas2 Location: 6387-6645 bp Feature: domain Description: HNHc Note: nucleases Location: 6819-6981 bp Feature: domain Description: HNHc Note: nucleases Location: 681 9-6981 bp Feature: gene Location: 8112-8633 bp Feature: gene Location: 8685-9107 bp Feature: domain Description: DUF1380 Location: 8688-8991 bp Feature: domain Description: DUF1 380 Location: 8688-8991 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF905 (pfam06006), PRK13732 (single-stranded DNA-binding protein; Provisional), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), DUF1380 (pfam07128)

Seq: WHSI01000145.1 Shigella flexneri strain 5908.2 NODE_145_length_8463_cov_279.892559, whole genome shotgun sequence (8463 bp)
Overview 1 RT 1: 5907-8124 bp Neighborhood of RT #1 [5907, 8124] COG3547 RVT-GII Feature: gene Location: 5907-6392 bp Feature: domain Description: COG3547 Location: 5925-6378 bp Feature: domain Description: COG3547 Location: 592 5-6378 bp Feature: gene Location: 6488-6655 bp Feature: gene Location: 6928-7899 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7114-7768 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7114-7768 bp Feature: gene Location: 7987-8124 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), RVT-GII

Seq: WHSI01000167.1 Shigella flexneri strain 5908.2 NODE_167_length_6154_cov_311.722396, whole genome shotgun sequence (6154 bp)
Overview 1 RT 1: 2010-5896 bp Neighborhood of RT #1 [2010, 5916] RVT-GII GIIM RVT-GII Tra5 PAP2_acid_phosphatase Feature: gene Location: 2010-2252 bp Feature: gene Location: 2424-2579 bp Feature: gene Location: 2605-3132 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2611-2755 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2611-2755 bp Feature: domain Description: GIIM Note: maturase Location: 2839-3055 bp Feature: domain Description: GIIM Note: maturase Location: 283 9-3 055 bp Feature: gene Location: 3142-3414 bp Feature: gene Location: 3431-4558 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3731-4388 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 73 1-43 88 bp Feature: gene Location: 4571-4771 bp Feature: domain Description: Tra5 Location: 4574-4754 bp Feature: domain Description: Tra5 Location: 4574-4754 bp Feature: gene Location: 5167-5916 bp Feature: domain Description: PAP2_acid_phosphatase Location: 5242-5896 bp Feature: domain Description: PAP2_acid_phosphatase Location: 5242-5896 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), Tra5 (COG2801), PAP2_acid_phosphatase (cd03397)

Seq: WHSI01000235.1 Shigella flexneri strain 5908.2 NODE_235_length_2511_cov_267.262531, whole genome shotgun sequence (2511 bp)
Overview 1 RT 1: 2-2087 bp Neighborhood of RT #1 [2, 2332] PHA02517 RVT-GII GIIM Feature: gene Location: 2-217 bp Feature: domain Description: PHA02517 Location: 5-152 bp Feature: domain Description: PHA02517 Location: 5-152 bp Feature: gene Location: 809-2332 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1082-1814 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1082-1814 bp Feature: domain Description: GIIM Note: maturase Location: 1889-2087 bp Feature: domain Description: GIIM Note: maturase Location: 1889-2087 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)