myRT

myRT report for GCA_013152415.1_ASM1315241v1

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Seq: JAADGI010000029.1 Gammaproteobacteria bacterium isolate M_MetaBat.112 contig-127_12, whole genome shotgun sequence (147740 bp)
Overview 1 RT 1: 1866-10301 bp Neighborhood of RT #1 [1866, 10301] CRISPR_Cas2 RVT-CRISPR Cas1_I-II-III TIGR03986 cas_cyan_RAMP RAMPs TIGR03986 TIGR03986 Feature: gene Location: 1866-2153 bp Feature: domain Description: CRISPR_Cas2 Location: 1875-2088 bp Feature: domain Description: CRISPR_Cas2 Location: 1 875-2088 bp Feature: gene Location: 2157-4955 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 3165-3762 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 31 65-3762 bp Feature: domain Description: Cas1_I-II-III Location: 3993-4920 bp Feature: domain Description: Cas1 _I-II-III Location: 3993-4920 bp Feature: gene Location: 5078-8443 bp Feature: domain Description: TIGR03986 Location: 5141-5348 bp Feature: domain Description: TIGR03986 Location: 51 41 -5348 bp Feature: domain Description: cas_cyan_RAMP Location: 5507-5729 bp Feature: domain Description: cas_cyan_RAMP Location: 5507-5729 bp Feature: domain Description: RAMPs Location: 5984-6452 bp Feature: domain Description: RAMPs Location: 5984-6452 bp Feature: domain Description: TIGR03986 Location: 6719-7073 bp Feature: domain Description: TIGR03986 Location: 671 9-7073 bp Feature: domain Description: TIGR03986 Location: 7223-7925 bp Feature: domain Description: TIGR03986 Location: 7223-7925 bp Feature: gene Location: 8448-10301 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CRISPR_Cas2 (pfam09827), RVT-CRISPR, Cas1_I-II-III (cl00656), TIGR03986 (CRISPR-associated protein), cas_cyan_RAMP (TIGR02581), RAMPs (pfam03787)

Seq: JAADGI010000026.1 Gammaproteobacteria bacterium isolate M_MetaBat.112 contig-127_327, whole genome shotgun sequence (59169 bp)
Overview 1 RT 1: 12251-17261 bp Neighborhood of RT #1 [12251, 17261] HicB RVT-GII GIIM Feature: gene Location: 12251-12580 bp Feature: domain Description: HicB Location: 12263-12575 bp Feature: domain Description: HicB Location: 12 2 63-12 575 bp Feature: gene Location: 13177-13305 bp Feature: gene Location: 13400-14737 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13691-14351 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13691-14351 bp Feature: domain Description: GIIM Note: maturase Location: 14420-14651 bp Feature: domain Description: GIIM Note: maturase Location: 1442 0-14651 bp Feature: gene Location: 14929-16737 bp Feature: gene Location: 16797-17261 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HicB (pfam05534), RVT-GII, GIIM (pfam08388)

Seq: JAADGI010000007.1 Gammaproteobacteria bacterium isolate M_MetaBat.112 contig-127_377, whole genome shotgun sequence (104703 bp)
Overview 1 RT 1: 53947-57963 bp Neighborhood of RT #1 [53947, 57963] BaeS COG4567 RVT-GII GIIM Feature: gene Location: 53947-55236 bp Feature: domain Description: BaeS Location: 54430-55210 bp Feature: domain Description: BaeS Location: 5443 0-55210 bp Feature: gene Location: 55260-55796 bp Feature: domain Description: COG4567 Location: 55272-55791 bp Feature: domain Description: COG4567 Location: 55272-55791 bp Feature: gene Location: 56113-57447 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 56389-57076 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 563 89-57076 bp Feature: domain Description: GIIM Note: maturase Location: 57142-57364 bp Feature: domain Description: GIIM Note: maturase Location: 57142-573 64 bp Feature: gene Location: 57453-57602 bp Feature: gene Location: 57652-57963 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT BaeS (COG0642), COG4567 (Two-component response regulator, ActR/RegA family, consists of REC and Fis-type HTH domains ), RVT-GII, GIIM (pfam08388)