myRT

myRT report for GCA_013152765.1_ASM1315276v1

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Seq: JAADFT010000005.1 Calditrichaeota bacterium isolate M_MaxBin.061 contig-127_10479, whole genome shotgun sequence (13374 bp)
Overview 1 RT 1: 1-10441 bp Neighborhood of RT #1 [1, 10441] PTZ00368 retropepsin_like_bacteria RVT-UNC RNase_HI_RT_Ty3 Integrase_H2C2 rve Feature: gene Location: 1-1485 bp Feature: domain Description: PTZ00368 Location: 1276-1390 bp Feature: domain Description: PTZ00368 Location: 1 276-1 390 bp Feature: gene Location: 1488-6248 bp Feature: domain Description: retropepsin_like_bacteria Location: 1815-2088 bp Feature: domain Description: retropepsin_like_bacteria Location: 1 81 5-2088 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 3714-3840 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 371 4-3840 bp Feature: domain Description: RNase_HI_RT_Ty3 Location: 4161-4524 bp Feature: domain Description: RNase_HI_RT_Ty3 Location: 41 61 -4524 bp Feature: domain Description: Integrase_H2C2 Location: 4857-5031 bp Feature: domain Description: Integrase_H2C2 Location: 4857-5031 bp Feature: domain Description: rve Location: 5088-5409 bp Feature: domain Description: rve Location: 5088-5409 bp Feature: gene Location: 6915-10070 bp Feature: gene Location: 10205-10441 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PTZ00368 (universal minicircle sequence binding protein (UMSBP); Provisional), retropepsin_like_bacteria (cd05483), RVT-UG20/RVT-UG26/RVT-CRISPR/RVT-Retrons(RVT-UNC), RNase_HI_RT_Ty3 (cd09274), Integrase_H2C2 (pfam17921), rve (pfam00665)

Seq: JAADFT010000456.1 Calditrichaeota bacterium isolate M_MaxBin.061 contig-127_51290, whole genome shotgun sequence (3130 bp)
Overview 1 RT 1: 435-3128 bp Neighborhood of RT #1 [435, 3128] RVT-GII KOG4768 Feature: gene Location: 435-764 bp Feature: gene Location: 705-2381 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1023-1698 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 102 3-1698 bp Feature: domain Description: KOG4768 Location: 1839-2376 bp Feature: domain Description: KOG4768 Location: 1839-2 376 bp Feature: gene Location: 2452-2772 bp Feature: gene Location: 2769-3128 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, KOG4768 (KOG4768, Mitochondrial mRNA maturase )

Seq: JAADFT010000485.1 Calditrichaeota bacterium isolate M_MaxBin.061 contig-127_53461, whole genome shotgun sequence (3722 bp)
Overview 1 RT 1: 61-2873 bp Neighborhood of RT #1 [61, 2902] RVT-GII DDE_Tnp_1 Dimer_Tnp_Tn5 Feature: gene Location: 61-1560 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 478-1168 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 478-1168 bp Feature: gene Location: 1718-1939 bp Feature: gene Location: 2012-2902 bp Feature: domain Description: DDE_Tnp_1 Location: 2042-2594 bp Feature: domain Description: DDE_Tnp_1 Location: 2042-2594 bp Feature: domain Description: Dimer_Tnp_Tn5 Location: 2612-2873 bp Feature: domain Description: Dimer_Tnp_Tn5 Location: 2612-2873 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, DDE_Tnp_1 (pfam01609), Dimer_Tnp_Tn5 (pfam02281)