myRT

myRT report for GCA_013154665.1_ASM1315466v1

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Seq: JAAMMT010000209.1 Shigella sonnei strain 19.0820.1561 NODE_209_length_5507_cov_66.842726, whole genome shotgun sequence (5507 bp)
Overview 1 RT 1: 3005-4984 bp Neighborhood of RT #1 [3005, 5010] COG3547 RVT-GII GIIM RVT-GII Feature: gene Location: 3005-3490 bp Feature: domain Description: COG3547 Location: 3023-3455 bp Feature: domain Description: COG3547 Location: 3023-3455 bp Feature: gene Location: 3586-3753 bp Feature: gene Location: 3779-4306 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3785-3929 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3785-3929 bp Feature: domain Description: GIIM Note: maturase Location: 4007-4229 bp Feature: domain Description: GIIM Note: maturase Location: 4007-4229 bp Feature: gene Location: 4321-5010 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4522-4984 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4522-4984 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), RVT-GII, GIIM (pfam08388)

Seq: JAAMMT010000221.1 Shigella sonnei strain 19.0820.1561 NODE_221_length_4862_cov_70.386207, whole genome shotgun sequence (4862 bp)
Overview 1 RT 1: 107-4184 bp Neighborhood of RT #1 [107, 4186] RVT-GII RVT-GII GIIM ushA Feature: gene Location: 107-1234 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 407-1064 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 407-1064 bp Feature: gene Location: 1533-2060 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1539-1683 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1539-1683 bp Feature: domain Description: GIIM Note: maturase Location: 1767-1983 bp Feature: domain Description: GIIM Note: maturase Location: 1767-1983 bp Feature: gene Location: 2413-2655 bp Feature: gene Location: 2567-4186 bp Feature: domain Description: ushA Location: 2582-4184 bp Feature: domain Description: ushA Location: 2 582 -4184 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), ushA (PRK09558)

Seq: JAAMMT010000285.1 Shigella sonnei strain 19.0820.1561 NODE_285_length_2553_cov_68.045234, whole genome shotgun sequence (2553 bp)
Overview 1 RT 1: 3-2551 bp Neighborhood of RT #1 [3, 2551] DDE_Tnp_1 RVT-GII RVT-GII InsE Feature: gene Location: 3-137 bp Feature: gene Location: 248-1030 bp Feature: domain Description: DDE_Tnp_1 Location: 254-962 bp Feature: domain Description: DDE_Tnp_1 Location: 254-962 bp Feature: gene Location: 1056-1259 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1164-1254 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1164-1254 bp Feature: gene Location: 1320-1676 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1329-1650 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13 29-1650 bp Feature: gene Location: 1770-2273 bp Feature: domain Description: InsE Location: 1929-2127 bp Feature: domain Description: InsE Location: 1929-2127 bp Feature: gene Location: 2315-2551 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_1 (pfam01609), RVT-GII, InsE (COG2963)