myRT

myRT report for GCA_013155575.1_ASM1315557v1

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Seq: JABJTU010000137.1 Corallococcus exiguus strain AB039A NODE_137_length_25167_cov_38.6946, whole genome shotgun sequence (25167 bp)
Overview 1 RT 1: 6258-19108 bp Neighborhood of RT #1 [6258, 19173] BetA BetA BetA DAP2 RVT-Retrons SWIM WD40 HEAT_2 HEAT_2 HEAT_2 HEAT_2 HEAT_2 HEAT_2 HEAT_2 HEAT_2 HEAT_2 HEAT_2 HEAT_2 HEAT_2 HEAT_2 Feature: gene Location: 6258-7781 bp Feature: domain Description: BetA Location: 6264-6825 bp Feature: domain Description: BetA Location: 6264-6825 bp Feature: domain Description: BetA Location: 6885-7191 bp Feature: domain Description: BetA Location: 6885-71 91 bp Feature: domain Description: BetA Location: 7338-7764 bp Feature: domain Description: BetA Location: 7338-7764 bp Feature: gene Location: 7954-8931 bp Feature: domain Description: DAP2 Location: 8095-8833 bp Feature: domain Description: DAP2 Location: 8095-8833 bp Feature: gene Location: 8939-10384 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 9494-10136 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 9494-1 01 36 bp Feature: gene Location: 10784-12643 bp Feature: domain Description: SWIM Location: 12254-12338 bp Feature: domain Description: SWIM Location: 1 2254-1 2338 bp Feature: gene Location: 12640-19173 bp Feature: domain Description: WD40 Location: 12670-13555 bp Feature: domain Description: WD40 Location: 1 2670-1 3555 bp Feature: domain Description: HEAT_2 Location: 13669-13876 bp Feature: domain Description: HEAT_2 Location: 1 3669-1 3876 bp Feature: domain Description: HEAT_2 Location: 14479-14728 bp Feature: domain Description: HEAT_2 Location: 1 4479-1 4728 bp Feature: domain Description: HEAT_2 Location: 14770-14974 bp Feature: domain Description: HEAT_2 Location: 1 4770-1 4974 bp Feature: domain Description: HEAT_2 Location: 15151-15373 bp Feature: domain Description: HEAT_2 Location: 1 51 51 -1 5373 bp Feature: domain Description: HEAT_2 Location: 15577-15790 bp Feature: domain Description: HEAT_2 Location: 1 5577-1 5790 bp Feature: domain Description: HEAT_2 Location: 15922-16045 bp Feature: domain Description: HEAT_2 Location: 1 5922-1 6045 bp Feature: domain Description: HEAT_2 Location: 16510-16669 bp Feature: domain Description: HEAT_2 Location: 1 651 0-1 6669 bp Feature: domain Description: HEAT_2 Location: 16693-16903 bp Feature: domain Description: HEAT_2 Location: 1 6693-1 6903 bp Feature: domain Description: HEAT_2 Location: 16954-17170 bp Feature: domain Description: HEAT_2 Location: 1 6954-1 71 70 bp Feature: domain Description: HEAT_2 Location: 17383-17539 bp Feature: domain Description: HEAT_2 Location: 1 7383-1 7539 bp Feature: domain Description: HEAT_2 Location: 17923-18160 bp Feature: domain Description: HEAT_2 Location: 1 7923-1 81 60 bp Feature: domain Description: HEAT_2 Location: 18664-18817 bp Feature: domain Description: HEAT_2 Location: 1 8664-1 881 7 bp Feature: domain Description: HEAT_2 Location: 18955-19108 bp Feature: domain Description: HEAT_2 Location: 1 8955-1 91 08 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SWIM (pfam04434), WD40 (smart00320), HEAT_2 (pfam13646), BetA (COG2303), DAP2 (COG1506), RVT-Retrons

Seq: JABJTU010000013.1 Corallococcus exiguus strain AB039A NODE_13_length_73203_cov_34.4161, whole genome shotgun sequence (73203 bp)
Overview 1 RT 1: 33971-39200 bp Neighborhood of RT #1 [33971, 39208] COG4099 RVT-Retrons YdfG AraC_binding AraC Feature: gene Location: 33971-34879 bp Feature: domain Description: COG4099 Location: 34025-34616 bp Feature: domain Description: COG4099 Location: 3402 5-34616 bp Feature: gene Location: 35080-35877 bp Feature: gene Location: 35888-37216 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 36332-36986 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 36332 -36986 bp Feature: gene Location: 37476-38213 bp Feature: domain Description: YdfG Location: 37479-38208 bp Feature: domain Description: YdfG Location: 37479-382 08 bp Feature: gene Location: 38366-39208 bp Feature: domain Description: AraC_binding Location: 38483-38843 bp Feature: domain Description: AraC_binding Location: 38483-38843 bp Feature: domain Description: AraC Location: 38897-39200 bp Feature: domain Description: AraC Location: 38897-392 00 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG4099 (Predicted peptidase ), RVT-Retrons, YdfG (COG4221), AraC_binding (pfam02311), AraC (COG2207)

Seq: JABJTU010000300.1 Corallococcus exiguus strain AB039A NODE_300_length_11543_cov_41.086, whole genome shotgun sequence (11543 bp)
Overview 1 RT 1: 2-3876 bp Neighborhood of RT #1 [2, 3876] RVT-GII GIIM Feature: gene Location: 2-151 bp Feature: gene Location: 862-2172 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1147-1765 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1147-1765 bp Feature: domain Description: GIIM Note: maturase Location: 1837-2059 bp Feature: domain Description: GIIM Note: maturase Location: 183 7-2059 bp Feature: gene Location: 2346-2699 bp Feature: gene Location: 2749-3876 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: JABJTU010000065.1 Corallococcus exiguus strain AB039A NODE_65_length_36938_cov_34.1939, whole genome shotgun sequence (36938 bp)
Overview 1 RT 1: 32351-34918 bp Neighborhood of RT #1 [32351, 34959] RVT-GII TnpB_IS66 Feature: gene Location: 32351-33928 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 32846-33536 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3284 6-33536 bp Feature: gene Location: 34275-34589 bp Feature: gene Location: 34594-34959 bp Feature: domain Description: TnpB_IS66 Location: 34621-34918 bp Feature: domain Description: TnpB_IS66 Location: 34 621-34 918 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, TnpB_IS66 (pfam05717)