myRT

myRT report for GCA_013166465.1_ASM1316646v1

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Seq: JABKKI010000001.1 Prevotella sp. PCJ2 PCJ2_1, whole genome shotgun sequence (578489 bp)
Overview 1 RT 1: 64514-67171 bp Neighborhood of RT #1 [64514, 67206] RVT-DGRs MethyltransfD12 ThyA Feature: gene Location: 64514-64651 bp Feature: gene Location: 64738-64962 bp Feature: gene Location: 65007-65687 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 65010-65388 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 6501 0-65388 bp Feature: gene Location: 65801-66625 bp Feature: domain Description: MethyltransfD12 Location: 65840-66386 bp Feature: domain Description: MethyltransfD1 2 Location: 65840-66386 bp Feature: gene Location: 66793-67206 bp Feature: domain Description: ThyA Location: 66856-67171 bp Feature: domain Description: ThyA Location: 66856-671 71 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, MethyltransfD12 (pfam02086), ThyA (COG0207)

Seq: JABKKI010000016.1 Prevotella sp. PCJ2 PCJ2_16, whole genome shotgun sequence (80981 bp)
Overview 1 RT 1: 144-5189 bp 2 RT 2: 33673-38961 bp Neighborhood of RT #1 [144, 5545] COG4646 RVT_N RVT-GII GIIM RutR Neighborhood of RT #2 [33673, 38999] Bac_Flav_CT_G RVT_N RVT-GII GIIM Bac_Flav_CT_G DUF3876 Feature: gene Location: 144-1160 bp Feature: domain Description: COG4646 Location: 150-777 bp Feature: domain Description: COG4646 Location: 150-777 bp Feature: gene Location: 1813-3504 bp Feature: domain Description: RVT_N Location: 1891-2134 bp Feature: domain Description: RVT_N Location: 1891-2 134 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2179-2827 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 179-2 82 7 bp Feature: domain Description: GIIM Note: maturase Location: 2881-3112 bp Feature: domain Description: GIIM Note: maturase Location: 2 881-3112 bp Feature: gene Location: 3458-4786 bp Feature: gene Location: 4790-5545 bp Feature: domain Description: RutR Location: 4940-5189 bp Feature: domain Description: RutR Location: 4940-5189 bp Feature: gene Location: 33673-35706 bp Feature: domain Description: Bac_Flav_CT_G Location: 33676-35701 bp Feature: domain Description: Bac_Flav_CT_G Location: 33676-35701 bp Feature: gene Location: 35899-36105 bp Feature: gene Location: 36285-37985 bp Feature: domain Description: RVT_N Location: 36384-36627 bp Feature: domain Description: RVT_N Location: 36384-3662 7 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 36672-37320 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 36672 -3732 0 bp Feature: domain Description: GIIM Note: maturase Location: 37371-37605 bp Feature: domain Description: GIIM Note: maturase Location: 37371-37605 bp Feature: gene Location: 37988-38578 bp Feature: domain Description: Bac_Flav_CT_G Location: 38105-38561 bp Feature: domain Description: Bac_Flav_CT_G Location: 38105-38561 bp Feature: gene Location: 38616-38999 bp Feature: domain Description: DUF3876 Location: 38694-38961 bp Feature: domain Description: DUF3876 Location: 38694-38961 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG4646 (Adenine-specific DNA methylase, N12 class ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), RutR (TIGR03613), Bac_Flav_CT_G (TIGR03783), DUF3876 (pfam12992)

Seq: JABKKI010000021.1 Prevotella sp. PCJ2 PCJ2_21, whole genome shotgun sequence (31557 bp)
Overview 1 RT 1: 9126-15451 bp Neighborhood of RT #1 [9126, 15451] Relaxase YWFCY TrwB_AAD_bind RVT-GII Intron_maturas2 HNHc Feature: gene Location: 9126-10376 bp Feature: domain Description: Relaxase Location: 9156-9618 bp Feature: domain Description: Relaxase Location: 9156-9618 bp Feature: gene Location: 10410-11951 bp Feature: domain Description: YWFCY Location: 10419-10596 bp Feature: domain Description: YWFCY Location: 10419-10596 bp Feature: domain Description: TrwB_AAD_bind Location: 11715-11940 bp Feature: domain Description: TrwB_AAD_bind Location: 11715-11940 bp Feature: gene Location: 12376-14346 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12799-13621 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12799-13 621 bp Feature: domain Description: Intron_maturas2 Location: 13783-14002 bp Feature: domain Description: Intron_maturas2 Location: 13 783 -14002 bp Feature: domain Description: HNHc Note: nucleases Location: 14167-14323 bp Feature: domain Description: HNHc Note: nucleases Location: 14167-143 23 bp Feature: gene Location: 14333-14941 bp Feature: gene Location: 15002-15451 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Relaxase (pfam03432), YWFCY (pfam14293), TrwB_AAD_bind (pfam10412), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: JABKKI010000004.1 Prevotella sp. PCJ2 PCJ2_4, whole genome shotgun sequence (254273 bp)
Overview 1 RT 1: 141879-149009 bp Neighborhood of RT #1 [141879, 149026] Relaxase RVT-UG3 RVT-UG8 HTH_XRE HsdM Feature: gene Location: 141879-142820 bp Feature: domain Description: Relaxase Location: 141903-142602 bp Feature: domain Description: Relaxase Location: 14 1903-14 2602 bp Feature: gene Location: 142856-143260 bp Feature: gene Location: 143392-144846 bp Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 143866-144382 bp Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 14 3866-14 4 382 bp Feature: gene Location: 145005-147014 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 145446-145899 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 14 54 4 6-14 5899 bp Feature: gene Location: 147276-147482 bp Feature: domain Description: HTH_XRE Location: 147297-147462 bp Feature: domain Description: HTH_XRE Location: 14 7297-14 74 62 bp Feature: gene Location: 147530-149026 bp Feature: domain Description: HsdM Location: 147881-149009 bp Feature: domain Description: HsdM Location: 14 7881-14 9009 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Relaxase (pfam03432), RVT-UG3, RVT-UG8, HTH_XRE (smart00530), HsdM (COG0286)