myRT

myRT report for GCA_013166545.1_ASM1316654v1

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Seq: JABKKH010000001.1 Prevotella sp. PJ1A PJ1A_1, whole genome shotgun sequence (564272 bp)
Overview 1 RT 1: 141879-149009 bp Neighborhood of RT #1 [141879, 149026] Relaxase RVT-UG3 RVT-UG8 HTH_XRE HsdM Feature: gene Location: 141879-142820 bp Feature: domain Description: Relaxase Location: 141903-142602 bp Feature: domain Description: Relaxase Location: 1 41 903-1 42602 bp Feature: gene Location: 142856-143260 bp Feature: gene Location: 143392-144846 bp Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 143866-144382 bp Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 1 43866-1 44382 bp Feature: gene Location: 145005-147014 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 145446-145899 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 1 45446-1 45899 bp Feature: gene Location: 147276-147482 bp Feature: domain Description: HTH_XRE Location: 147297-147462 bp Feature: domain Description: HTH_XRE Location: 1 47297-1 47462 bp Feature: gene Location: 147530-149026 bp Feature: domain Description: HsdM Location: 147881-149009 bp Feature: domain Description: HsdM Location: 1 47881 -1 49009 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Relaxase (pfam03432), RVT-UG3, RVT-UG8, HTH_XRE (smart00530), HsdM (COG0286)

Seq: JABKKH010000014.1 Prevotella sp. PJ1A PJ1A_14, whole genome shotgun sequence (62925 bp)
Overview 1 RT 1: 9280-15605 bp Neighborhood of RT #1 [9280, 15605] Relaxase YWFCY TrwB_AAD_bind RVT-GII Intron_maturas2 HNHc Feature: gene Location: 9280-10530 bp Feature: domain Description: Relaxase Location: 9310-9772 bp Feature: domain Description: Relaxase Location: 9310-9772 bp Feature: gene Location: 10564-12105 bp Feature: domain Description: YWFCY Location: 10573-10750 bp Feature: domain Description: YWFCY Location: 10573-10750 bp Feature: domain Description: TrwB_AAD_bind Location: 11869-12094 bp Feature: domain Description: TrwB_AAD_bind Location: 11869-12 094 bp Feature: gene Location: 12530-14500 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12953-13775 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12 953-13775 bp Feature: domain Description: Intron_maturas2 Location: 13937-14156 bp Feature: domain Description: Intron_maturas2 Location: 13937-14156 bp Feature: domain Description: HNHc Note: nucleases Location: 14321-14477 bp Feature: domain Description: HNHc Note: nucleases Location: 1432 1-14477 bp Feature: gene Location: 14487-15095 bp Feature: gene Location: 15156-15605 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Relaxase (pfam03432), YWFCY (pfam14293), TrwB_AAD_bind (pfam10412), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: JABKKH010000009.1 Prevotella sp. PJ1A PJ1A_9, whole genome shotgun sequence (153070 bp)
Overview 1 RT 1: 148727-151892 bp Neighborhood of RT #1 [148727, 151915] RVT-DGRs Dam Mor Feature: gene Location: 148727-149026 bp Feature: gene Location: 149041-149178 bp Feature: gene Location: 149265-150560 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 149469-150057 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 149469-150057 bp Feature: gene Location: 150674-151498 bp Feature: domain Description: Dam Location: 150851-151331 bp Feature: domain Description: Dam Location: 150851-1513 3 1 bp Feature: gene Location: 151673-151915 bp Feature: domain Description: Mor Location: 151754-151892 bp Feature: domain Description: Mor Location: 151754-151892 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, Dam (pfam05869), Mor (pfam08765)