myRT

myRT report for GCA_013166605.1_ASM1316660v1

Download annotations/find similar RTs

Seq: JABKKF010000010.1 Prevotella sp. PMUR PMUR_10, whole genome shotgun sequence (113066 bp)
Overview 1 RT 1: 53437-57584 bp Neighborhood of RT #1 [53437, 57592] RVT-CRISPR Cas1_I-II-III Cas2_I_II_III HAD_HPP Feature: gene Location: 53437-53631 bp Feature: gene Location: 54004-54141 bp Feature: gene Location: 54181-56469 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 54400-55009 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 54400-55009 bp Feature: domain Description: Cas1_I-II-III Location: 55462-56428 bp Feature: domain Description: Cas1 _I-II-III Location: 55462-56428 bp Feature: gene Location: 56472-56759 bp Feature: domain Description: Cas2_I_II_III Location: 56496-56706 bp Feature: domain Description: Cas2_I_II_III Location: 56496-56706 bp Feature: gene Location: 56789-57592 bp Feature: domain Description: HAD_HPP Location: 56804-57584 bp Feature: domain Description: HAD_HPP Location: 56804-57584 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-CRISPR, Cas1_I-II-III (cl00656), Cas2_I_II_III (cl11442), HAD_HPP (cd07517)

Seq: JABKKF010000003.1 Prevotella sp. PMUR PMUR_3, whole genome shotgun sequence (346878 bp)
Overview 1 RT 1: 214563-224590 bp Neighborhood of RT #1 [214563, 224590] Laminin_G_3 CotH RVT-DGRs Feature: gene Location: 214563-221798 bp Feature: domain Description: Laminin_G_3 Location: 217260-217671 bp Feature: domain Description: Laminin_G_3 Location: 2 172 60-2 17671 bp Feature: domain Description: CotH Location: 218622-219060 bp Feature: domain Description: CotH Location: 2 1862 2 -2 19060 bp Feature: gene Location: 222030-222287 bp Feature: gene Location: 222369-223682 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 222588-223185 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 2 2 2 588-2 2 3185 bp Feature: gene Location: 223679-224164 bp Feature: gene Location: 224348-224590 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Laminin_G_3 (pfam13385), CotH (pfam08757), RVT-DGRs

Seq: JABKKF010000006.1 Prevotella sp. PMUR PMUR_6, whole genome shotgun sequence (179312 bp)
Overview 1 RT 1: 105221-112891 bp Neighborhood of RT #1 [105221, 112914] Relaxase YWFCY RVT-GII Intron_maturas2 HNHc TraG-D_C UvrD UvrD Feature: gene Location: 105221-106471 bp Feature: domain Description: Relaxase Location: 105317-105773 bp Feature: domain Description: Relaxase Location: 1053 17-105773 bp Feature: gene Location: 106504-107670 bp Feature: domain Description: YWFCY Location: 106513-106690 bp Feature: domain Description: YWFCY Location: 106513 -106690 bp Feature: gene Location: 108214-110031 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 108481-109303 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 108481-1093 03 bp Feature: domain Description: Intron_maturas2 Location: 109441-109681 bp Feature: domain Description: Intron_maturas2 Location: 109441-109681 bp Feature: domain Description: HNHc Note: nucleases Location: 109852-110002 bp Feature: domain Description: HNHc Note: nucleases Location: 109852-110002 bp Feature: gene Location: 109995-110996 bp Feature: domain Description: TraG-D_C Location: 110373-110703 bp Feature: domain Description: TraG-D_C Location: 1103 73 -110703 bp Feature: gene Location: 111133-112914 bp Feature: domain Description: UvrD Location: 111145-112087 bp Feature: domain Description: UvrD Location: 111145-112087 bp Feature: domain Description: UvrD Location: 112684-112891 bp Feature: domain Description: UvrD Location: 112684-112891 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Relaxase (pfam03432), YWFCY (pfam14293), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), TraG-D_C (pfam12696), UvrD (COG0210)