myRT

myRT report for GCA_013167955.1_ASM1316795v1

Download annotations/find similar RTs

Seq: BLWF01000001.1 Thermanaeromonas sp. C210 DNA, scaffold01, whole genome shotgun sequence (850082 bp)
Overview 1 RT 1: 268347-274539 bp Neighborhood of RT #1 [268347, 274790] ImmA RVT-GII GIIM UvrD UvrD RecB Feature: gene Location: 268347-268640 bp Feature: domain Description: ImmA Location: 268416-268599 bp Feature: domain Description: ImmA Location: 26841 6-268599 bp Feature: gene Location: 268986-269129 bp Feature: gene Location: 269247-270269 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 269253-269823 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 269253-269823 bp Feature: domain Description: GIIM Note: maturase Location: 269880-270105 bp Feature: domain Description: GIIM Note: maturase Location: 269880-2701 05 bp Feature: gene Location: 270420-270908 bp Feature: gene Location: 271674-274790 bp Feature: domain Description: UvrD Location: 271704-273045 bp Feature: domain Description: UvrD Location: 271 704-273045 bp Feature: domain Description: UvrD Location: 273570-273906 bp Feature: domain Description: UvrD Location: 273570-273906 bp Feature: domain Description: RecB Location: 274350-274539 bp Feature: domain Description: RecB Location: 274350-274539 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ImmA (COG2856), RVT-GII, GIIM (pfam08388), UvrD (COG0210), RecB (COG4998)

Seq: BLWF01000003.1 Thermanaeromonas sp. C210 DNA, scaffold03, whole genome shotgun sequence (592863 bp)
Overview 1 RT 1: 244903-247507 bp Neighborhood of RT #1 [244903, 247507] RVT-GII PHA02517 Feature: gene Location: 244903-245052 bp Feature: gene Location: 245299-246192 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 245644-246160 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 45644-2 46160 bp Feature: gene Location: 246258-247142 bp Feature: domain Description: PHA02517 Location: 246381-247086 bp Feature: domain Description: PHA02 517 Location: 2 46381-2 47086 bp Feature: gene Location: 247325-247507 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, PHA02517 (putative transposase OrfB; Reviewed)

Seq: BLWF01000004.1 Thermanaeromonas sp. C210 DNA, scaffold04, whole genome shotgun sequence (544062 bp)
Overview 1 RT 1: 9321-14801 bp 2 RT 2: 29196-33247 bp 3 RT 3: 76948-79747 bp Neighborhood of RT #1 [9321, 14801] GcvT GcvT RVT-GII GIIM Neighborhood of RT #2 [29196, 33258] spore_V_K DUF1540 DUF1540 RVT-GII GIIM hfq Neighborhood of RT #3 [76948, 79747] CmuC_like RVT-GII GIIM Feature: gene Location: 9321-10694 bp Feature: domain Description: GcvT Location: 9393-10020 bp Feature: domain Description: GcvT Location: 93 93 -10020 bp Feature: domain Description: GcvT Location: 10149-10641 bp Feature: domain Description: GcvT Location: 10149-10641 bp Feature: gene Location: 11037-11666 bp Feature: gene Location: 11778-12800 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11784-12354 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11784-123 54 bp Feature: domain Description: GIIM Note: maturase Location: 12411-12636 bp Feature: domain Description: GIIM Note: maturase Location: 12411-1263 6 bp Feature: gene Location: 12951-13439 bp Feature: gene Location: 13617-14801 bp Feature: gene Location: 29196-30212 bp Feature: domain Description: spore_V_K Location: 29337-30114 bp Feature: domain Description: spore_V_K Location: 293 3 7-3 0114 bp Feature: gene Location: 30615-31007 bp Feature: domain Description: DUF1540 Location: 30633-30762 bp Feature: domain Description: DUF1540 Location: 3 063 3 -3 0762 bp Feature: domain Description: DUF1540 Location: 30870-30987 bp Feature: domain Description: DUF1540 Location: 3 0870-3 0987 bp Feature: gene Location: 31145-32167 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31151-31721 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 1151-3 1721 bp Feature: domain Description: GIIM Note: maturase Location: 31778-32003 bp Feature: domain Description: GIIM Note: maturase Location: 3 1778-3 2003 bp Feature: gene Location: 32318-32806 bp Feature: gene Location: 33007-33258 bp Feature: domain Description: hfq Location: 33016-33247 bp Feature: domain Description: hfq Location: 3 3 016-3 3 247 bp Feature: gene Location: 76948-77358 bp Feature: domain Description: CmuC_like Location: 76954-77317 bp Feature: domain Description: CmuC_like Location: 76954-773 17 bp Feature: gene Location: 77539-77679 bp Feature: gene Location: 77764-78786 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 77770-78340 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 77770-783 40 bp Feature: domain Description: GIIM Note: maturase Location: 78397-78622 bp Feature: domain Description: GIIM Note: maturase Location: 783 97-78622 bp Feature: gene Location: 78937-79425 bp Feature: gene Location: 79601-79747 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), GcvT (COG0404), spore_V_K (TIGR02881), DUF1540 (pfam07561), hfq (PRK00395), CmuC_like (cd03309)