myRT

myRT report for GCA_013168575.1_ASM1316857v1

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Seq: SMHE01000025.1 Dickeya dadantii strain Kunimi-3 Dd-kunimi_contig_25, whole genome shotgun sequence (22567 bp)
Overview 1 RT 1: 1-3655 bp Neighborhood of RT #1 [1, 3657] ArdC RVT-GII RVT-GII Intron_maturas2 HNHc MPTase-PolyVal CcdA Feature: gene Location: 1-996 bp Feature: domain Description: ArdC Location: 10-391 bp Feature: domain Description: ArdC Location: 1 0-391 bp Feature: gene Location: 996-1802 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1263-1713 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 263-1 71 3 bp Feature: gene Location: 1874-2854 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1904-2093 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 904-2093 bp Feature: domain Description: Intron_maturas2 Location: 2180-2465 bp Feature: domain Description: Intron_maturas2 Location: 21 80-2465 bp Feature: domain Description: HNHc Note: nucleases Location: 2618-2783 bp Feature: domain Description: HNHc Note: nucleases Location: 261 8-2783 bp Feature: gene Location: 2953-3099 bp Feature: domain Description: MPTase-PolyVal Location: 2956-3058 bp Feature: domain Description: MPTase-PolyVal Location: 2956-3058 bp Feature: gene Location: 3421-3657 bp Feature: domain Description: CcdA Location: 3448-3655 bp Feature: domain Description: CcdA Location: 3448-3655 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), ArdC (COG4227), MPTase-PolyVal (pfam18818), CcdA (pfam07362)

Seq: SMHE01000028.1 Dickeya dadantii strain Kunimi-3 Dd-kunimi_contig_28, whole genome shotgun sequence (11069 bp)
Overview 1 RT 1: 4073-9336 bp Neighborhood of RT #1 [4073, 9336] HTH_XRE RVT-Retrons Feature: gene Location: 4073-4312 bp Feature: gene Location: 4364-4654 bp Feature: domain Description: HTH_XRE Location: 4376-4541 bp Feature: domain Description: HTH_XRE Location: 4376-4541 bp Feature: gene Location: 4689-5348 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4785-5337 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4785-5337 bp Feature: gene Location: 5352-5606 bp Feature: gene Location: 5647-9336 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_XRE (smart00530), RVT-Retrons

Seq: SMHE01000009.1 Dickeya dadantii strain Kunimi-3 Dd-kunimi_contig_9, whole genome shotgun sequence (35890 bp)
Overview 1 RT 1: 30959-34801 bp Neighborhood of RT #1 [30959, 34806] RVT-Retrons PRK09692 CcdB Feature: gene Location: 30959-31705 bp Feature: gene Location: 31951-32097 bp Feature: gene Location: 32294-34018 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 32432-33056 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3 243 2-3 3 056 bp Feature: gene Location: 34205-34474 bp Feature: domain Description: PRK09692 Location: 34259-34334 bp Feature: domain Description: PRK09692 Location: 3 4259-3 43 3 4 bp Feature: gene Location: 34492-34806 bp Feature: domain Description: CcdB Location: 34498-34801 bp Feature: domain Description: CcdB Location: 3 4498-3 4801 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, PRK09692 (Integrase; provisional), CcdB (pfam01845)