myRT

myRT report for GCA_013169215.1_ASM1316921v1

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Seq: SWGI01000124.1 Pseudomonas aeruginosa strain C2-102-3 contig_113_1, whole genome shotgun sequence (1570 bp)
Overview 1 RT 1: 238-1408 bp Neighborhood of RT #1 [238, 1506] RVT-GII GIIM Feature: gene Location: 238-1506 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 451-1108 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 451 -1 1 08 bp Feature: domain Description: GIIM Note: maturase Location: 1186-1408 bp Feature: domain Description: GIIM Note: maturase Location: 1 1 86-1 408 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: SWGI01000056.1 Pseudomonas aeruginosa strain C2-102-3 contig_50_1, whole genome shotgun sequence (153547 bp)
Overview 1 RT 1: 56675-66983 bp 2 RT 2: 83242-92091 bp Neighborhood of RT #1 [56675, 66985] COG3177 RVT_N RVT-GII GIIM HNH PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 PRK05658 Neighborhood of RT #2 [83242, 92120] PRK10770 LptD RVT_N RVT-GII YkfC HNH COG3178 NTP_transferase_like_1 Feature: gene Location: 56675-57796 bp Feature: domain Description: COG3177 Location: 56693-57785 bp Feature: domain Description: COG3177 Location: 56693-57785 bp Feature: gene Location: 58058-58219 bp Feature: gene Location: 58522-60207 bp Feature: RT Description: RVT_N Location: 58579-58819 bp Feature: RT Description: RVT_N Location: 58579-58819 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 58867-59503 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 58867-59503 bp Feature: domain Description: GIIM Note: maturase Location: 59557-59788 bp Feature: domain Description: GIIM Note: maturase Location: 59557-59788 bp Feature: domain Description: HNH Note: nucleases Location: 60040-60178 bp Feature: domain Description: HNH Note: nucleases Location: 60040-60178 bp Feature: gene Location: 61288-65025 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 61396-62053 bp Feature: domain Description: PBP2 _BvgS_HisK_like Location: 61396-62 053 bp Feature: domain Description: PRK09776 Location: 62266-62737 bp Feature: domain Description: PRK09776 Location: 62 2 66-62 737 bp Feature: domain Description: PAS Location: 62782-63319 bp Feature: domain Description: PAS Location: 62 782 -63319 bp Feature: domain Description: PRK10060 Location: 63328-64975 bp Feature: domain Description: PRK10060 Location: 6332 8-64975 bp Feature: gene Location: 65132-66985 bp Feature: domain Description: PRK05658 Location: 65144-66983 bp Feature: domain Description: PRK05658 Location: 65144-66983 bp Feature: gene Location: 83242-84456 bp Feature: domain Description: PRK10770 Location: 83254-84448 bp Feature: domain Description: PRK10770 Location: 832 54-84448 bp Feature: gene Location: 84515-87316 bp Feature: domain Description: LptD Location: 84710-87302 bp Feature: domain Description: LptD Location: 84710-87302 bp Feature: gene Location: 87449-89161 bp Feature: RT Description: RVT_N Location: 87506-87749 bp Feature: RT Description: RVT_N Location: 87506-87749 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 87794-88427 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 87794-8842 7 bp Feature: domain Description: YkfC Location: 88640-88790 bp Feature: domain Description: YkfC Location: 88640-88790 bp Feature: domain Description: HNH Note: nucleases Location: 88967-89105 bp Feature: domain Description: HNH Note: nucleases Location: 88967-89105 bp Feature: gene Location: 90433-91449 bp Feature: domain Description: COG3178 Location: 90436-91435 bp Feature: domain Description: COG3178 Location: 90436-91435 bp Feature: gene Location: 91446-92120 bp Feature: domain Description: NTP_transferase_like_1 Location: 91452-92091 bp Feature: domain Description: NTP_transferase_like_1 Location: 91452 -92 091 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3177 (Fic family protein ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), PRK05658 (RNA polymerase sigma factor RpoD; Validated)
PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), LptD (COG1452), YkfC (COG3344), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), NTP_transferase_like_1 (cd06422)