myRT

myRT report for GCA_013169255.1_ASM1316925v1

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Seq: SWGN01000244.1 Pseudomonas aeruginosa strain C2-64-3 Contig_184_1, whole genome shotgun sequence (35906 bp)
Overview 1 RT 1: 1767-9078 bp Neighborhood of RT #1 [1767, 10133] AAA_21 AAA_21 RVT-UG5 YeeA DUF262 Feature: gene Location: 1767-2906 bp Feature: domain Description: AAA_21 Location: 1839-1908 bp Feature: domain Description: AAA_21 Location: 1 839-1 908 bp Feature: domain Description: AAA_21 Location: 2382-2712 bp Feature: domain Description: AAA_21 Location: 2382-271 2 bp Feature: gene Location: 2906-3463 bp Feature: gene Location: 3460-6480 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 3955-4426 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 3955-4426 bp Feature: gene Location: 6477-8258 bp Feature: domain Description: YeeA Location: 7344-8124 bp Feature: domain Description: YeeA Location: 7344-81 24 bp Feature: gene Location: 8262-10133 bp Feature: domain Description: DUF262 Location: 8310-9078 bp Feature: domain Description: DUF262 Location: 831 0-9078 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AAA_21 (pfam13304), RVT-UG5, YeeA (COG1002), DUF262 (pfam03235)

Seq: SWGN01000030.1 Pseudomonas aeruginosa strain C2-64-3 Contig_21_1, whole genome shotgun sequence (141232 bp)
Overview 1 RT 1: 56109-66842 bp 2 RT 2: 83100-91920 bp Neighborhood of RT #1 [56109, 66844] NERD COG3177 RVT_N RVT-GII GIIM HNH PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 PRK05658 Neighborhood of RT #2 [83100, 91949] PRK10770 LptD RVT_N RVT-GII YkfC HNH COG3178 NTP_transferase_like_1 Feature: gene Location: 56109-56324 bp Feature: domain Description: NERD Location: 56136-56259 bp Feature: domain Description: NERD Location: 56136-562 59 bp Feature: gene Location: 56537-57658 bp Feature: domain Description: COG3177 Location: 56555-57647 bp Feature: domain Description: COG3177 Location: 56555-57647 bp Feature: gene Location: 58381-60066 bp Feature: domain Description: RVT_N Location: 58438-58678 bp Feature: domain Description: RVT_N Location: 58438-58678 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 58726-59362 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5872 6-59362 bp Feature: domain Description: GIIM Note: maturase Location: 59416-59647 bp Feature: domain Description: GIIM Note: maturase Location: 59416-59647 bp Feature: domain Description: HNH Note: nucleases Location: 59899-60037 bp Feature: domain Description: HNH Note: nucleases Location: 59899-60037 bp Feature: gene Location: 61147-64884 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 61255-61912 bp Feature: domain Description: PBP2 _BvgS_HisK_like Location: 612 55-61912 bp Feature: domain Description: PRK09776 Location: 62125-62596 bp Feature: domain Description: PRK09776 Location: 62 12 5-62 596 bp Feature: domain Description: PAS Location: 62653-63178 bp Feature: domain Description: PAS Location: 62 653-63178 bp Feature: domain Description: PRK10060 Location: 63190-64834 bp Feature: domain Description: PRK10060 Location: 63190-64834 bp Feature: gene Location: 64991-66844 bp Feature: domain Description: PRK05658 Location: 65003-66842 bp Feature: domain Description: PRK05658 Location: 65003-66842 bp Feature: gene Location: 83100-84314 bp Feature: domain Description: PRK10770 Location: 83112-84306 bp Feature: domain Description: PRK10770 Location: 83112 -84306 bp Feature: gene Location: 84373-87144 bp Feature: domain Description: LptD Location: 84568-87130 bp Feature: domain Description: LptD Location: 84568-87130 bp Feature: gene Location: 87277-88989 bp Feature: domain Description: RVT_N Location: 87334-87577 bp Feature: domain Description: RVT_N Location: 87334-87577 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 87622-88258 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8762 2 -882 58 bp Feature: domain Description: YkfC Location: 88468-88618 bp Feature: domain Description: YkfC Location: 88468-88618 bp Feature: domain Description: HNH Note: nucleases Location: 88795-88933 bp Feature: domain Description: HNH Note: nucleases Location: 88795-88933 bp Feature: gene Location: 90262-91278 bp Feature: domain Description: COG3178 Location: 90265-91264 bp Feature: domain Description: COG3178 Location: 902 65-912 64 bp Feature: gene Location: 91275-91949 bp Feature: domain Description: NTP_transferase_like_1 Location: 91281-91920 bp Feature: domain Description: NTP_transferase_like_1 Location: 912 81-9192 0 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT NERD (pfam08378), COG3177 (Fic family protein ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase)
PRK05658 (RNA polymerase sigma factor RpoD; Validated), PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), LptD (COG1452), YkfC (COG3344), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), NTP_transferase_like_1 (cd06422)

Seq: SWGN01000049.1 Pseudomonas aeruginosa strain C2-64-3 Contig_36_1, whole genome shotgun sequence (37842 bp)
Overview 1 RT 1: 1-2922 bp Neighborhood of RT #1 [1, 2922] RVT-GII GIIM Feature: gene Location: 1-207 bp Feature: gene Location: 743-2011 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 956-1613 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 956-1613 bp Feature: domain Description: GIIM Note: maturase Location: 1691-1913 bp Feature: domain Description: GIIM Note: maturase Location: 1691-1913 bp Feature: gene Location: 2161-2559 bp Feature: gene Location: 2743-2922 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: SWGN01000064.1 Pseudomonas aeruginosa strain C2-64-3 Contig_46_1, whole genome shotgun sequence (102390 bp)
Overview 1 RT 1: 11154-16735 bp Neighborhood of RT #1 [11154, 16740] SdhE RVT-GII YkfC HNH YgfZ HDOD Feature: gene Location: 11154-11348 bp Feature: gene Location: 11487-11741 bp Feature: domain Description: SdhE Location: 11493-11733 bp Feature: domain Description: SdhE Location: 114 93-11733 bp Feature: gene Location: 11817-13136 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11820-12396 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11820-12396 bp Feature: domain Description: YkfC Location: 12594-12750 bp Feature: domain Description: YkfC Location: 12594 -12750 bp Feature: domain Description: HNH Note: nucleases Location: 12933-13071 bp Feature: domain Description: HNH Note: nucleases Location: 12933-13071 bp Feature: gene Location: 14859-15803 bp Feature: domain Description: YgfZ Location: 14868-15768 bp Feature: domain Description: YgfZ Location: 14 868-15768 bp Feature: gene Location: 15904-16740 bp Feature: domain Description: HDOD Location: 15907-16735 bp Feature: domain Description: HDOD Location: 15907-16735 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SdhE (COG2938), RVT-GII, YkfC (COG3344), HNH (pfam01844), YgfZ (COG0354), HDOD (pfam08668)