myRT

myRT report for GCA_013169265.1_ASM1316926v1

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Seq: SWGM01000035.1 Pseudomonas aeruginosa strain C2-100-1 contig_26_2, whole genome shotgun sequence (138405 bp)
Overview 1 RT 1: 91783-96065 bp Neighborhood of RT #1 [91783, 96100] nhaA RVT-GII GIIM ParE_toxin ParD Feature: gene Location: 91783-93093 bp Feature: domain Description: nhaA Location: 91861-93019 bp Feature: domain Description: nhaA Location: 91 861 -9301 9 bp Feature: gene Location: 93247-93726 bp Feature: gene Location: 93566-94987 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 93923-94538 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 93923-94538 bp Feature: domain Description: GIIM Note: maturase Location: 94592-94820 bp Feature: domain Description: GIIM Note: maturase Location: 94592-94820 bp Feature: gene Location: 95474-95824 bp Feature: domain Description: ParE_toxin Location: 95486-95798 bp Feature: domain Description: ParE_toxin Location: 95486-95798 bp Feature: gene Location: 95828-96100 bp Feature: domain Description: ParD Location: 95831-96065 bp Feature: domain Description: ParD Location: 95831 -96065 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT nhaA (PRK14856), RVT-GII, GIIM (pfam08388), ParE_toxin (pfam05016), ParD (pfam09386)

Seq: SWGM01000003.1 Pseudomonas aeruginosa strain C2-100-1 contig_2_1, whole genome shotgun sequence (144530 bp)
Overview 1 RT 1: 61109-71124 bp Neighborhood of RT #1 [61109, 71126] RMtype1_S_EcoKI-TRD1-CR1_like RVT_N RVT-GII GIIM HNH PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 PRK05658 Feature: gene Location: 61109-61690 bp Feature: domain Description: RMtype1_S_EcoKI-TRD1-CR1_like Location: 61118-61637 bp Feature: domain Description: RMtype1_S_EcoKI-TRD1-CR1_like Location: 61118-61637 bp Feature: gene Location: 61898-62308 bp Feature: gene Location: 62663-64348 bp Feature: RT Description: RVT_N Location: 62720-62960 bp Feature: RT Description: RVT_N Location: 62 72 0-62 960 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 63008-63644 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 63008-63644 bp Feature: domain Description: GIIM Note: maturase Location: 63698-63929 bp Feature: domain Description: GIIM Note: maturase Location: 63698-6392 9 bp Feature: domain Description: HNH Note: nucleases Location: 64181-64319 bp Feature: domain Description: HNH Note: nucleases Location: 64181-64319 bp Feature: gene Location: 65429-69166 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 65537-66194 bp Feature: domain Description: PBP2 _BvgS_HisK_like Location: 65537-66194 bp Feature: domain Description: PRK09776 Location: 66407-66878 bp Feature: domain Description: PRK09776 Location: 66407-66878 bp Feature: domain Description: PAS Location: 66950-67460 bp Feature: domain Description: PAS Location: 66950-67460 bp Feature: domain Description: PRK10060 Location: 67469-69116 bp Feature: domain Description: PRK10060 Location: 67469-69116 bp Feature: gene Location: 69273-71126 bp Feature: domain Description: PRK05658 Location: 69285-71124 bp Feature: domain Description: PRK05658 Location: 692 85-7112 4 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RMtype1_S_EcoKI-TRD1-CR1_like (cd17252), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), PRK05658 (RNA polymerase sigma factor RpoD; Validated)