myRT

myRT report for GCA_013169305.1_ASM1316930v1

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Seq: SWGO01000039.1 Pseudomonas aeruginosa strain C2-64-2 contig_31_1, whole genome shotgun sequence (230618 bp)
Overview 1 RT 1: 49286-58127 bp 2 RT 2: 74391-85061 bp Neighborhood of RT #1 [49286, 58135] NTP_transferase_like_1 COG3178 RVT_N RVT-GII YkfC HNH LptD PRK10770 Neighborhood of RT #2 [74391, 85126] PRK05658 PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 RVT_N RVT-GII GIIM HNH COG3177 NERD Feature: gene Location: 49286-49960 bp Feature: domain Description: NTP_transferase_like_1 Location: 49292-49931 bp Feature: domain Description: NTP_transferase_like_1 Location: 49292-49931 bp Feature: gene Location: 49957-50973 bp Feature: domain Description: COG3178 Location: 49960-50959 bp Feature: domain Description: COG31 78 Location: 49960-50959 bp Feature: gene Location: 52246-53958 bp Feature: domain Description: RVT_N Location: 52303-52546 bp Feature: domain Description: RVT_N Location: 52303-52546 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 52591-53227 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 52591 -53227 bp Feature: domain Description: YkfC Location: 53437-53587 bp Feature: domain Description: YkfC Location: 53437-53587 bp Feature: domain Description: HNH Note: nucleases Location: 53764-53902 bp Feature: domain Description: HNH Note: nucleases Location: 53764-53902 bp Feature: gene Location: 54091-56862 bp Feature: domain Description: LptD Location: 54286-56848 bp Feature: domain Description: LptD Location: 54286-56848 bp Feature: gene Location: 56921-58135 bp Feature: domain Description: PRK10770 Location: 56933-58127 bp Feature: domain Description: PRK1 0770 Location: 56933-581 27 bp Feature: gene Location: 74391-76244 bp Feature: domain Description: PRK05658 Location: 74403-76242 bp Feature: domain Description: PRK05658 Location: 74403-76242 bp Feature: gene Location: 76351-80088 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 76459-77116 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 76459-771 1 6 bp Feature: domain Description: PRK09776 Location: 77329-77800 bp Feature: domain Description: PRK09776 Location: 77329-77800 bp Feature: domain Description: PAS Location: 77857-78382 bp Feature: domain Description: PAS Location: 77857-78382 bp Feature: domain Description: PRK10060 Location: 78394-80038 bp Feature: domain Description: PRK1 0060 Location: 78394-80038 bp Feature: gene Location: 81169-82854 bp Feature: domain Description: RVT_N Location: 81226-81466 bp Feature: domain Description: RVT_N Location: 81 226-81 466 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 81514-82150 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 81 51 4-821 50 bp Feature: domain Description: GIIM Note: maturase Location: 82204-82435 bp Feature: domain Description: GIIM Note: maturase Location: 82204-82435 bp Feature: domain Description: HNH Note: nucleases Location: 82687-82825 bp Feature: domain Description: HNH Note: nucleases Location: 82687-82825 bp Feature: gene Location: 83577-84698 bp Feature: domain Description: COG3177 Location: 83595-84687 bp Feature: domain Description: COG31 77 Location: 83595-84687 bp Feature: gene Location: 84911-85126 bp Feature: domain Description: NERD Location: 84938-85061 bp Feature: domain Description: NERD Location: 84938-85061 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT NTP_transferase_like_1 (cd06422), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNH (pfam01844), LptD (COG1452), PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), PRK05658 (RNA polymerase sigma factor RpoD; Validated), PBP2_BvgS_HisK_like (cd01007)
PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), GIIM (pfam08388), COG3177 (Fic family protein ), NERD (pfam08378)

Seq: SWGO01000043.1 Pseudomonas aeruginosa strain C2-64-2 contig_34_1, whole genome shotgun sequence (184316 bp)
Overview 1 RT 1: 85653-91239 bp Neighborhood of RT #1 [85653, 91239] HDOD YgfZ RVT-GII YkfC HNH SdhE Feature: gene Location: 85653-86489 bp Feature: domain Description: HDOD Location: 85656-86484 bp Feature: domain Description: HDOD Location: 85656-86484 bp Feature: gene Location: 86590-87534 bp Feature: domain Description: YgfZ Location: 86599-87499 bp Feature: domain Description: YgfZ Location: 86599-87499 bp Feature: gene Location: 89257-90576 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 89260-89836 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 892 60-89836 bp Feature: domain Description: YkfC Location: 90034-90190 bp Feature: domain Description: YkfC Location: 90034-90190 bp Feature: domain Description: HNH Note: nucleases Location: 90373-90511 bp Feature: domain Description: HNH Note: nucleases Location: 90373-90511 bp Feature: gene Location: 90652-90906 bp Feature: domain Description: SdhE Location: 90658-90898 bp Feature: domain Description: SdhE Location: 90658-90898 bp Feature: gene Location: 91045-91239 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HDOD (pfam08668), YgfZ (COG0354), RVT-GII, YkfC (COG3344), HNH (pfam01844), SdhE (COG2938)

Seq: SWGO01000075.1 Pseudomonas aeruginosa strain C2-64-2 contig_65_1, whole genome shotgun sequence (37207 bp)
Overview 1 RT 1: 31351-36910 bp Neighborhood of RT #1 [31351, 37206] CHD CHD RVT-GII GIIM DUF772 Feature: gene Location: 31351-32895 bp Feature: domain Description: CHD Location: 31567-31981 bp Feature: domain Description: CHD Location: 3 1567-3 1981 bp Feature: domain Description: CHD Location: 32209-32698 bp Feature: domain Description: CHD Location: 3 2209-3 2698 bp Feature: gene Location: 33979-34158 bp Feature: gene Location: 34890-36158 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 35103-35760 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 5103 -3 5760 bp Feature: domain Description: GIIM Note: maturase Location: 35838-36060 bp Feature: domain Description: GIIM Note: maturase Location: 3 583 8-3 6060 bp Feature: gene Location: 36547-37206 bp Feature: domain Description: DUF772 Location: 36715-36910 bp Feature: domain Description: DUF772 Location: 3 6715-3 6910 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CHD (cd07302), RVT-GII, GIIM (pfam08388), DUF772 (pfam05598)

Seq: SWGO01000087.1 Pseudomonas aeruginosa strain C2-64-2 contig_76_1, whole genome shotgun sequence (35910 bp)
Overview 1 RT 1: 1769-9080 bp Neighborhood of RT #1 [1769, 10135] AAA_21 AAA_21 RVT-UG5 YeeA DUF262 Feature: gene Location: 1769-2908 bp Feature: domain Description: AAA_21 Location: 1841-1910 bp Feature: domain Description: AAA_21 Location: 184 1-1910 bp Feature: domain Description: AAA_21 Location: 2384-2714 bp Feature: domain Description: AAA_21 Location: 2384 -2714 bp Feature: gene Location: 2908-3465 bp Feature: gene Location: 3462-6482 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 3957-4428 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 3957-4 4 28 bp Feature: gene Location: 6479-8260 bp Feature: domain Description: YeeA Location: 7346-8126 bp Feature: domain Description: YeeA Location: 734 6-8126 bp Feature: gene Location: 8264-10135 bp Feature: domain Description: DUF262 Location: 8312-9080 bp Feature: domain Description: DUF262 Location: 8312-9080 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AAA_21 (pfam13304), RVT-UG5, YeeA (COG1002), DUF262 (pfam03235)