myRT

myRT report for GCA_013169325.1_ASM1316932v1

Download annotations/find similar RTs

Seq: SWGQ01000032.1 Pseudomonas aeruginosa strain C2-42 contig_27_1, whole genome shotgun sequence (132236 bp)
Overview 1 RT 1: 40981-46562 bp Neighborhood of RT #1 [40981, 46567] SdhE RVT-GII YkfC HNH YgfZ HDOD Feature: gene Location: 40981-41175 bp Feature: gene Location: 41314-41568 bp Feature: domain Description: SdhE Location: 41320-41560 bp Feature: domain Description: SdhE Location: 41 320-41 560 bp Feature: gene Location: 41644-42963 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41647-42223 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41 647-42223 bp Feature: domain Description: YkfC Location: 42421-42577 bp Feature: domain Description: YkfC Location: 42421 -42577 bp Feature: domain Description: HNH Note: nucleases Location: 42760-42898 bp Feature: domain Description: HNH Note: nucleases Location: 42760-42898 bp Feature: gene Location: 44686-45630 bp Feature: domain Description: YgfZ Location: 44695-45595 bp Feature: domain Description: YgfZ Location: 44695-45595 bp Feature: gene Location: 45731-46567 bp Feature: domain Description: HDOD Location: 45734-46562 bp Feature: domain Description: HDOD Location: 45734-46562 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SdhE (COG2938), RVT-GII, YkfC (COG3344), HNH (pfam01844), YgfZ (COG0354), HDOD (pfam08668)

Seq: SWGQ01000084.1 Pseudomonas aeruginosa strain C2-42 contig_76_1, whole genome shotgun sequence (42912 bp)
Overview 1 RT 1: 4525-8904 bp Neighborhood of RT #1 [4525, 8904] ABC_phnC DUF772 RVT-GII GIIM Feature: gene Location: 4525-5352 bp Feature: domain Description: ABC_phnC Location: 4555-5269 bp Feature: domain Description: ABC_phnC Location: 4555-52 69 bp Feature: gene Location: 5695-6336 bp Feature: domain Description: DUF772 Location: 5845-6040 bp Feature: domain Description: DUF772 Location: 5845-6040 bp Feature: gene Location: 6725-7993 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6938-7595 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6938-7595 bp Feature: domain Description: GIIM Note: maturase Location: 7673-7895 bp Feature: domain Description: GIIM Note: maturase Location: 7673-7895 bp Feature: gene Location: 8143-8541 bp Feature: gene Location: 8725-8904 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ABC_phnC (TIGR02315), DUF772 (pfam05598), RVT-GII, GIIM (pfam08388)

Seq: SWGQ01000008.1 Pseudomonas aeruginosa strain C2-42 contig_7_1, whole genome shotgun sequence (141373 bp)
Overview 1 RT 1: 49285-58126 bp 2 RT 2: 74390-88311 bp Neighborhood of RT #1 [49285, 58134] NTP_transferase_like_1 COG3178 RVT_N RVT-GII YkfC HNH LptD PRK10770 Neighborhood of RT #2 [74390, 88466] PRK05658 PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 RVT_N RVT-GII GIIM HNH COG3177 IMPa_N_2 IMPa_helical Peptidase_M60 Feature: gene Location: 49285-49959 bp Feature: domain Description: NTP_transferase_like_1 Location: 49291-49930 bp Feature: domain Description: NTP_transferase_like_1 Location: 49291-4993 0 bp Feature: gene Location: 49956-50972 bp Feature: domain Description: COG3178 Location: 49959-50958 bp Feature: domain Description: COG3 178 Location: 49959-50958 bp Feature: gene Location: 52245-53957 bp Feature: domain Description: RVT_N Location: 52302-52545 bp Feature: domain Description: RVT_N Location: 523 02-52545 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 52590-53226 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 52590-53 226 bp Feature: domain Description: YkfC Location: 53436-53586 bp Feature: domain Description: YkfC Location: 53 43 6-53 586 bp Feature: domain Description: HNH Note: nucleases Location: 53763-53901 bp Feature: domain Description: HNH Note: nucleases Location: 53 763 -53 901 bp Feature: gene Location: 54090-56861 bp Feature: domain Description: LptD Location: 54285-56847 bp Feature: domain Description: LptD Location: 54285-56847 bp Feature: gene Location: 56920-58134 bp Feature: domain Description: PRK10770 Location: 56932-58126 bp Feature: domain Description: PRK10770 Location: 5693 2-58126 bp Feature: gene Location: 74390-76243 bp Feature: domain Description: PRK05658 Location: 74402-76241 bp Feature: domain Description: PRK05658 Location: 74402-76241 bp Feature: gene Location: 76350-80087 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 76458-77115 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 76458-77115 bp Feature: domain Description: PRK09776 Location: 77328-77799 bp Feature: domain Description: PRK09776 Location: 773 28-77799 bp Feature: domain Description: PAS Location: 77856-78381 bp Feature: domain Description: PAS Location: 77856-783 81 bp Feature: domain Description: PRK10060 Location: 78393-80037 bp Feature: domain Description: PRK10060 Location: 783 93 -8003 7 bp Feature: gene Location: 81168-82853 bp Feature: domain Description: RVT_N Location: 81225-81465 bp Feature: domain Description: RVT_N Location: 81225-81465 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 81513-82149 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 81513 -82149 bp Feature: domain Description: GIIM Note: maturase Location: 82203-82434 bp Feature: domain Description: GIIM Note: maturase Location: 82203 -8243 4 bp Feature: domain Description: HNH Note: nucleases Location: 82686-82824 bp Feature: domain Description: HNH Note: nucleases Location: 82686-82824 bp Feature: gene Location: 83576-84697 bp Feature: domain Description: COG3177 Location: 83594-84686 bp Feature: domain Description: COG3 177 Location: 83 594-84686 bp Feature: gene Location: 85740-88466 bp Feature: domain Description: IMPa_N_2 Location: 85947-86529 bp Feature: domain Description: IMPa_N_2 Location: 85947-86529 bp Feature: domain Description: IMPa_helical Location: 86610-86937 bp Feature: domain Description: IMPa_helical Location: 86610-8693 7 bp Feature: domain Description: Peptidase_M60 Location: 87381-88311 bp Feature: domain Description: Peptidase_M60 Location: 873 81-883 11 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT NTP_transferase_like_1 (cd06422), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNH (pfam01844), LptD (COG1452), PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), PRK05658 (RNA polymerase sigma factor RpoD; Validated), PBP2_BvgS_HisK_like (cd01007)
PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), GIIM (pfam08388), COG3177 (Fic family protein ), IMPa_N_2 (pfam18650), IMPa_helical (pfam18642), Peptidase_M60 (pfam13402)

Seq: SWGQ01000100.1 Pseudomonas aeruginosa strain C2-42 contig_91_1, whole genome shotgun sequence (35908 bp)
Overview 1 RT 1: 1768-9079 bp Neighborhood of RT #1 [1768, 10134] AAA_21 AAA_21 RVT-UG5 YeeA DUF262 Feature: gene Location: 1768-2907 bp Feature: domain Description: AAA_21 Location: 1840-1909 bp Feature: domain Description: AAA_21 Location: 184 0-1909 bp Feature: domain Description: AAA_21 Location: 2383-2713 bp Feature: domain Description: AAA_21 Location: 2383-2713 bp Feature: gene Location: 2907-3464 bp Feature: gene Location: 3461-6481 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 3956-4427 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 3956-4 4 27 bp Feature: gene Location: 6478-8259 bp Feature: domain Description: YeeA Location: 7345-8125 bp Feature: domain Description: YeeA Location: 734 5-8125 bp Feature: gene Location: 8263-10134 bp Feature: domain Description: DUF262 Location: 8311-9079 bp Feature: domain Description: DUF262 Location: 8311-9079 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AAA_21 (pfam13304), RVT-UG5, YeeA (COG1002), DUF262 (pfam03235)