myRT

myRT report for GCA_013169355.1_ASM1316935v1

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Seq: SWGR01000026.1 Pseudomonas aeruginosa strain C2-30-1 contig_24_1, whole genome shotgun sequence (132173 bp)
Overview 1 RT 1: 85652-91238 bp Neighborhood of RT #1 [85652, 91238] HDOD YgfZ RVT-GII YkfC HNH SdhE Feature: gene Location: 85652-86488 bp Feature: domain Description: HDOD Location: 85655-86483 bp Feature: domain Description: HDOD Location: 85655-86483 bp Feature: gene Location: 86589-87533 bp Feature: domain Description: YgfZ Location: 86598-87498 bp Feature: domain Description: YgfZ Location: 86598-87498 bp Feature: gene Location: 89256-90575 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 89259-89835 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 89259-89835 bp Feature: domain Description: YkfC Location: 90033-90189 bp Feature: domain Description: YkfC Location: 90033-901 89 bp Feature: domain Description: HNH Note: nucleases Location: 90372-90510 bp Feature: domain Description: HNH Note: nucleases Location: 90372-9051 0 bp Feature: gene Location: 90651-90905 bp Feature: domain Description: SdhE Location: 90657-90897 bp Feature: domain Description: SdhE Location: 90657-90897 bp Feature: gene Location: 91044-91238 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HDOD (pfam08668), YgfZ (COG0354), RVT-GII, YkfC (COG3344), HNH (pfam01844), SdhE (COG2938)

Seq: SWGR01000002.1 Pseudomonas aeruginosa strain C2-30-1 contig_2_1, whole genome shotgun sequence (141234 bp)
Overview 1 RT 1: 49285-58126 bp 2 RT 2: 74390-88311 bp Neighborhood of RT #1 [49285, 58134] NTP_transferase_like_1 COG3178 RVT_N RVT-GII YkfC HNH LptD PRK10770 Neighborhood of RT #2 [74390, 88466] PRK05658 PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 RVT_N RVT-GII GIIM HNH COG3177 IMPa_N_2 IMPa_helical Peptidase_M60 Feature: gene Location: 49285-49959 bp Feature: domain Description: NTP_transferase_like_1 Location: 49291-49930 bp Feature: domain Description: NTP_transferase_like_1 Location: 492 91-49930 bp Feature: gene Location: 49956-50972 bp Feature: domain Description: COG3178 Location: 49959-50958 bp Feature: domain Description: COG3178 Location: 49959-50958 bp Feature: gene Location: 52245-53957 bp Feature: domain Description: RVT_N Location: 52302-52545 bp Feature: domain Description: RVT_N Location: 52 302 -52 545 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 52590-53226 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 52 590-532 2 6 bp Feature: domain Description: YkfC Location: 53436-53586 bp Feature: domain Description: YkfC Location: 53436-53586 bp Feature: domain Description: HNH Note: nucleases Location: 53763-53901 bp Feature: domain Description: HNH Note: nucleases Location: 53763-53901 bp Feature: gene Location: 54090-56861 bp Feature: domain Description: LptD Location: 54285-56847 bp Feature: domain Description: LptD Location: 542 85-56847 bp Feature: gene Location: 56920-58134 bp Feature: domain Description: PRK10770 Location: 56932-58126 bp Feature: domain Description: PRK10770 Location: 56932 -5812 6 bp Feature: gene Location: 74390-76243 bp Feature: domain Description: PRK05658 Location: 74402-76241 bp Feature: domain Description: PRK05658 Location: 74402 -762 41 bp Feature: gene Location: 76350-80087 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 76458-77115 bp Feature: domain Description: PBP2 _BvgS_HisK_like Location: 76458-77115 bp Feature: domain Description: PRK09776 Location: 77328-77799 bp Feature: domain Description: PRK09776 Location: 7732 8-77799 bp Feature: domain Description: PAS Location: 77856-78381 bp Feature: domain Description: PAS Location: 77856-78381 bp Feature: domain Description: PRK10060 Location: 78393-80037 bp Feature: domain Description: PRK10060 Location: 78393-80037 bp Feature: gene Location: 81168-82853 bp Feature: domain Description: RVT_N Location: 81225-81465 bp Feature: domain Description: RVT_N Location: 812 2 5-81465 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 81513-82149 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 81513-82 149 bp Feature: domain Description: GIIM Note: maturase Location: 82203-82434 bp Feature: domain Description: GIIM Note: maturase Location: 82 2 03-82 434 bp Feature: domain Description: HNH Note: nucleases Location: 82686-82824 bp Feature: domain Description: HNH Note: nucleases Location: 82 686-82 82 4 bp Feature: gene Location: 83576-84697 bp Feature: domain Description: COG3177 Location: 83594-84686 bp Feature: domain Description: COG3177 Location: 83594-84686 bp Feature: gene Location: 85740-88466 bp Feature: domain Description: IMPa_N_2 Location: 85947-86529 bp Feature: domain Description: IMPa_N_2 Location: 85947-8652 9 bp Feature: domain Description: IMPa_helical Location: 86610-86937 bp Feature: domain Description: IMPa_helical Location: 86610-86937 bp Feature: domain Description: Peptidase_M60 Location: 87381-88311 bp Feature: domain Description: Peptidase_M60 Location: 87381-88311 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT NTP_transferase_like_1 (cd06422), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNH (pfam01844), LptD (COG1452), PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), PRK05658 (RNA polymerase sigma factor RpoD; Validated), PBP2_BvgS_HisK_like (cd01007)
PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), GIIM (pfam08388), COG3177 (Fic family protein ), IMPa_N_2 (pfam18650), IMPa_helical (pfam18642), Peptidase_M60 (pfam13402)

Seq: SWGR01000049.1 Pseudomonas aeruginosa strain C2-30-1 contig_43_1, whole genome shotgun sequence (35908 bp)
Overview 1 RT 1: 1768-9079 bp Neighborhood of RT #1 [1768, 10134] AAA_21 AAA_21 RVT-UG5 YeeA DUF262 Feature: gene Location: 1768-2907 bp Feature: domain Description: AAA_21 Location: 1840-1909 bp Feature: domain Description: AAA_21 Location: 1840-1909 bp Feature: domain Description: AAA_21 Location: 2383-2713 bp Feature: domain Description: AAA_21 Location: 23 83 -2713 bp Feature: gene Location: 2907-3464 bp Feature: gene Location: 3461-6481 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 3956-4427 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 3 956-4427 bp Feature: gene Location: 6478-8259 bp Feature: domain Description: YeeA Location: 7345-8125 bp Feature: domain Description: YeeA Location: 73 45-8125 bp Feature: gene Location: 8263-10134 bp Feature: domain Description: DUF262 Location: 8311-9079 bp Feature: domain Description: DUF262 Location: 83 11-9079 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AAA_21 (pfam13304), RVT-UG5, YeeA (COG1002), DUF262 (pfam03235)

Seq: SWGR01000071.1 Pseudomonas aeruginosa strain C2-30-1 contig_62_1, whole genome shotgun sequence (36931 bp)
Overview 1 RT 1: 2-2923 bp Neighborhood of RT #1 [2, 2923] RVT-GII GIIM Feature: gene Location: 2-208 bp Feature: gene Location: 744-2012 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 957-1614 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 957-1614 bp Feature: domain Description: GIIM Note: maturase Location: 1692-1914 bp Feature: domain Description: GIIM Note: maturase Location: 1692-1914 bp Feature: gene Location: 2162-2560 bp Feature: gene Location: 2744-2923 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)