myRT

myRT report for GCA_013169385.1_ASM1316938v1

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Seq: SWGS01000120.1 Pseudomonas aeruginosa strain C1-133-2 contig_105_1, whole genome shotgun sequence (35908 bp)
Overview 1 RT 1: 25775-33947 bp Neighborhood of RT #1 [25775, 34141] DUF262 YeeA RVT-UG5 AAA_21 AAA_21 Feature: gene Location: 25775-27646 bp Feature: domain Description: DUF262 Location: 25823-26591 bp Feature: domain Description: DUF262 Location: 25823-26591 bp Feature: gene Location: 27650-29431 bp Feature: domain Description: YeeA Location: 28517-29297 bp Feature: domain Description: YeeA Location: 2851 7-29297 bp Feature: gene Location: 29428-32448 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 29923-30394 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 29923-30394 bp Feature: gene Location: 32445-33002 bp Feature: gene Location: 33002-34141 bp Feature: domain Description: AAA_21 Location: 33074-33143 bp Feature: domain Description: AAA_21 Location: 33074-331 43 bp Feature: domain Description: AAA_21 Location: 33617-33947 bp Feature: domain Description: AAA_21 Location: 3361 7-33947 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF262 (pfam03235), YeeA (COG1002), RVT-UG5, AAA_21 (pfam13304)

Seq: SWGS01000127.1 Pseudomonas aeruginosa strain C1-133-2 contig_112_1, whole genome shotgun sequence (37487 bp)
Overview 1 RT 1: 31631-37190 bp Neighborhood of RT #1 [31631, 37486] CHD CHD RVT-GII GIIM DUF772 Feature: gene Location: 31631-33175 bp Feature: domain Description: CHD Location: 31847-32261 bp Feature: domain Description: CHD Location: 31847-32 2 61 bp Feature: domain Description: CHD Location: 32489-32978 bp Feature: domain Description: CHD Location: 32 489-32 978 bp Feature: gene Location: 34259-34438 bp Feature: gene Location: 35170-36438 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 35383-36040 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 35383-36040 bp Feature: domain Description: GIIM Note: maturase Location: 36118-36340 bp Feature: domain Description: GIIM Note: maturase Location: 36118-36340 bp Feature: gene Location: 36827-37486 bp Feature: domain Description: DUF772 Location: 36995-37190 bp Feature: domain Description: DUF772 Location: 36995-37190 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CHD (cd07302), RVT-GII, GIIM (pfam08388), DUF772 (pfam05598)

Seq: SWGS01000030.1 Pseudomonas aeruginosa strain C1-133-2 contig_27_1, whole genome shotgun sequence (184314 bp)
Overview 1 RT 1: 85652-91238 bp Neighborhood of RT #1 [85652, 91238] HDOD YgfZ RVT-GII YkfC HNH SdhE Feature: gene Location: 85652-86488 bp Feature: domain Description: HDOD Location: 85655-86483 bp Feature: domain Description: HDOD Location: 85655-86483 bp Feature: gene Location: 86589-87533 bp Feature: domain Description: YgfZ Location: 86598-87498 bp Feature: domain Description: YgfZ Location: 86598-87498 bp Feature: gene Location: 89256-90575 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 89259-89835 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 89259-8983 5 bp Feature: domain Description: YkfC Location: 90033-90189 bp Feature: domain Description: YkfC Location: 9003 3 -90189 bp Feature: domain Description: HNH Note: nucleases Location: 90372-90510 bp Feature: domain Description: HNH Note: nucleases Location: 903 72-90510 bp Feature: gene Location: 90651-90905 bp Feature: domain Description: SdhE Location: 90657-90897 bp Feature: domain Description: SdhE Location: 90657-90897 bp Feature: gene Location: 91044-91238 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HDOD (pfam08668), YgfZ (COG0354), RVT-GII, YkfC (COG3344), HNH (pfam01844), SdhE (COG2938)

Seq: SWGS01000041.1 Pseudomonas aeruginosa strain C1-133-2 contig_37_1, whole genome shotgun sequence (210330 bp)
Overview 1 RT 1: 49285-58126 bp 2 RT 2: 74390-85060 bp Neighborhood of RT #1 [49285, 58134] NTP_transferase_like_1 COG3178 RVT_N RVT-GII YkfC HNH LptD PRK10770 Neighborhood of RT #2 [74390, 85125] PRK05658 PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 RVT_N RVT-GII GIIM HNH COG3177 NERD Feature: gene Location: 49285-49959 bp Feature: domain Description: NTP_transferase_like_1 Location: 49291-49930 bp Feature: domain Description: NTP_transferase_like_1 Location: 4 9291-4 9930 bp Feature: gene Location: 49956-50972 bp Feature: domain Description: COG3178 Location: 49959-50958 bp Feature: domain Description: COG3178 Location: 4 9959-50958 bp Feature: gene Location: 52245-53957 bp Feature: domain Description: RVT_N Location: 52302-52545 bp Feature: domain Description: RVT_N Location: 52302-5254 5 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 52590-53226 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 52590-53226 bp Feature: domain Description: YkfC Location: 53436-53586 bp Feature: domain Description: YkfC Location: 534 36-53586 bp Feature: domain Description: HNH Note: nucleases Location: 53763-53901 bp Feature: domain Description: HNH Note: nucleases Location: 53763-53901 bp Feature: gene Location: 54090-56861 bp Feature: domain Description: LptD Location: 54285-56847 bp Feature: domain Description: LptD Location: 54 285-5684 7 bp Feature: gene Location: 56920-58134 bp Feature: domain Description: PRK10770 Location: 56932-58126 bp Feature: domain Description: PRK10770 Location: 56932-58126 bp Feature: gene Location: 74390-76243 bp Feature: domain Description: PRK05658 Location: 74402-76241 bp Feature: domain Description: PRK05658 Location: 74 4 02-7624 1 bp Feature: gene Location: 76350-80087 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 76458-77115 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 764 58-77115 bp Feature: domain Description: PRK09776 Location: 77328-77799 bp Feature: domain Description: PRK09776 Location: 77328-77799 bp Feature: domain Description: PAS Location: 77856-78381 bp Feature: domain Description: PAS Location: 77856-78381 bp Feature: domain Description: PRK10060 Location: 78393-80037 bp Feature: domain Description: PRK10060 Location: 78393-80037 bp Feature: gene Location: 81168-82853 bp Feature: domain Description: RVT_N Location: 81225-81465 bp Feature: domain Description: RVT_N Location: 81225-814 65 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 81513-82149 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 81513-8214 9 bp Feature: domain Description: GIIM Note: maturase Location: 82203-82434 bp Feature: domain Description: GIIM Note: maturase Location: 82203-824 34 bp Feature: domain Description: HNH Note: nucleases Location: 82686-82824 bp Feature: domain Description: HNH Note: nucleases Location: 82686-82824 bp Feature: gene Location: 83576-84697 bp Feature: domain Description: COG3177 Location: 83594-84686 bp Feature: domain Description: COG3177 Location: 83594 -84 686 bp Feature: gene Location: 84910-85125 bp Feature: domain Description: NERD Location: 84937-85060 bp Feature: domain Description: NERD Location: 84 937-85060 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT NTP_transferase_like_1 (cd06422), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNH (pfam01844), LptD (COG1452), PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), PRK05658 (RNA polymerase sigma factor RpoD; Validated), PBP2_BvgS_HisK_like (cd01007)
PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), GIIM (pfam08388), COG3177 (Fic family protein ), NERD (pfam08378)