myRT

myRT report for GCA_013169575.1_ASM1316957v1

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Seq: SWHC01000028.1 Escherichia coli strain C2-120 contig_25_1, whole genome shotgun sequence (115985 bp)
Overview 1 RT 1: 80847-86878 bp Neighborhood of RT #1 [80847, 86878] AbiEii AbiEi_3_N AbiEi_3 RVT-UG5 nitrilase Phage_ASH Feature: gene Location: 80847-81767 bp Feature: domain Description: AbiEii Location: 80889-81630 bp Feature: domain Description: AbiEii Location: 80889-81 630 bp Feature: gene Location: 81754-82557 bp Feature: domain Description: AbiEi_3_N Location: 81787-82048 bp Feature: domain Description: AbiEi_3_N Location: 81 787-82048 bp Feature: domain Description: AbiEi_3 Location: 82060-82516 bp Feature: domain Description: AbiEi_3 Location: 82060-8251 6 bp Feature: gene Location: 82852-86061 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 83380-83869 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 83380-83869 bp Feature: domain Description: nitrilase Location: 85375-85972 bp Feature: domain Description: nitrilase Location: 85375-85972 bp Feature: gene Location: 86222-86362 bp Feature: domain Description: Phage_ASH Location: 86249-86342 bp Feature: domain Description: Phage_ASH Location: 86249-86342 bp Feature: gene Location: 86408-86878 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AbiEii (pfam08843), AbiEi_3_N (pfam17194), AbiEi_3 (pfam11459), RVT-UG5, nitrilase (cl11424), Phage_ASH (pfam10554)

Seq: SWHC01000029.1 Escherichia coli strain C2-120 contig_26_1, whole genome shotgun sequence (61087 bp)
Overview 1 RT 1: 27782-31108 bp Neighborhood of RT #1 [27782, 31108] FRG RVT-Retrons HTH_XRE Feature: gene Location: 27782-27931 bp Feature: gene Location: 27970-29334 bp Feature: domain Description: FRG Location: 28537-28822 bp Feature: domain Description: FRG Location: 2 8537-2 882 2 bp Feature: gene Location: 29443-30393 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 29623-30166 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2 962 3-30166 bp Feature: gene Location: 30359-30679 bp Feature: domain Description: HTH_XRE Location: 30374-30533 bp Feature: domain Description: HTH_XRE Location: 30374-30533 bp Feature: gene Location: 30716-31108 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT FRG (smart00901), RVT-Retrons, HTH_XRE (smart00530)

Seq: SWHC01000045.1 Escherichia coli strain C2-120 contig_41_2, whole genome shotgun sequence (49820 bp)
Overview 1 RT 1: 8755-13046 bp 2 RT 2: 37749-42067 bp Neighborhood of RT #1 [8755, 13046] YesM RVT-GII GIIM RVT-GII Neighborhood of RT #2 [37749, 42123] PHA02517 RVT-GII GIIM PHA02517 InsE Feature: gene Location: 8755-10017 bp Feature: domain Description: YesM Location: 9268-10009 bp Feature: domain Description: YesM Location: 9268-10009 bp Feature: gene Location: 10047-10217 bp Feature: gene Location: 10567-11088 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10573-10855 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10573 -10855 bp Feature: domain Description: GIIM Note: maturase Location: 10903-11083 bp Feature: domain Description: GIIM Note: maturase Location: 10903 -11083 bp Feature: gene Location: 11116-11655 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11446-11524 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11446-11524 bp Feature: gene Location: 11686-11883 bp Feature: gene Location: 12141-13046 bp Feature: gene Location: 37749-38573 bp Feature: gene Location: 38700-38990 bp Feature: domain Description: PHA02517 Location: 38706-38925 bp Feature: domain Description: PHA02517 Location: 3 8706-3 8925 bp Feature: gene Location: 39582-41105 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 39855-40587 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 9855-40587 bp Feature: domain Description: GIIM Note: maturase Location: 40662-40860 bp Feature: domain Description: GIIM Note: maturase Location: 40662-40860 bp Feature: gene Location: 41282-41668 bp Feature: domain Description: PHA02517 Location: 41285-41666 bp Feature: domain Description: PHA02517 Location: 41285-41666 bp Feature: gene Location: 41773-42123 bp Feature: domain Description: InsE Location: 41782-42067 bp Feature: domain Description: InsE Location: 41782-42067 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YesM (COG2972), RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed), InsE (COG2963)