myRT

myRT report for GCA_013169635.1_ASM1316963v1

Download annotations/find similar RTs

Seq: SWHD01000028.1 Escherichia coli strain C2-129-2 contig_21_2, whole genome shotgun sequence (182821 bp)
Overview 1 RT 1: 27336-31176 bp Neighborhood of RT #1 [27336, 31178] umuC PRK10276 RVT-GII hlyE Feature: gene Location: 27336-27566 bp Feature: domain Description: umuC Location: 27339-27564 bp Feature: domain Description: umuC Location: 27339-27564 bp Feature: gene Location: 27566-27985 bp Feature: domain Description: PRK10276 Location: 27569-27983 bp Feature: domain Description: PRK1 0276 Location: 27569-27983 bp Feature: gene Location: 28064-29551 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 28469-29159 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 28469-291 59 bp Feature: gene Location: 29576-29962 bp Feature: gene Location: 30261-31178 bp Feature: domain Description: hlyE Location: 30270-31176 bp Feature: domain Description: hlyE Location: 30270-31 1 76 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT umuC (PRK03609), PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), RVT-GII, hlyE (PRK11376)

Seq: SWHD01000049.1 Escherichia coli strain C2-129-2 contig_40_2, whole genome shotgun sequence (55856 bp)
Overview 1 RT 1: 92-3263 bp Neighborhood of RT #1 [92, 3385] RVT-Retrons COG3950 TIGR02646 Feature: gene Location: 92-1024 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 191-788 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 191-788 bp Feature: gene Location: 1029-2654 bp Feature: domain Description: COG3950 Location: 1203-2556 bp Feature: domain Description: COG3950 Location: 12 03-2 556 bp Feature: gene Location: 2654-3385 bp Feature: domain Description: TIGR02646 Location: 2753-3263 bp Feature: domain Description: TIGR02 646 Location: 2 753-32 63 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3950 (Predicted ATP-binding protein involved in virulence ), TIGR02646 (TIGR02646 family protein), RVT-Retrons