myRT

myRT report for GCA_013169835.1_ASM1316983v1

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Seq: SWHO01000044.1 Escherichia coli strain C2-58 contig_40_1, whole genome shotgun sequence (80963 bp)
Overview 1 RT 1: 78139-80307 bp Neighborhood of RT #1 [78139, 80960] HTH_29 HTH_33 DDE_3 RVT-AbiP2 Feature: gene Location: 78139-78429 bp Feature: gene Location: 78439-79500 bp Feature: domain Description: HTH_29 Location: 78559-78730 bp Feature: domain Description: HTH_29 Location: 78559-78730 bp Feature: domain Description: HTH_33 Location: 78763-78925 bp Feature: domain Description: HTH_33 Location: 78763-78925 bp Feature: domain Description: DDE_3 Location: 78967-79396 bp Feature: domain Description: DDE_3 Location: 78967-79396 bp Feature: gene Location: 79602-80960 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 79851-80307 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 79851 -80307 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_29 (pfam13551), HTH_33 (pfam13592), DDE_3 (pfam13358), RVT-AbiP2

Seq: SWHO01000062.1 Escherichia coli strain C2-58 contig_57_1, whole genome shotgun sequence (58597 bp)
Overview 1 RT 1: 28586-33711 bp Neighborhood of RT #1 [28586, 33711] PRK15442 COG3666 DDE_Tnp_1_6 RVT-GII GIIM Feature: gene Location: 28586-29467 bp Feature: domain Description: PRK15442 Location: 28685-29390 bp Feature: domain Description: PRK15442 Location: 2 8685-2 9390 bp Feature: gene Location: 29717-31036 bp Feature: domain Description: COG3666 Location: 29738-30179 bp Feature: domain Description: COG3666 Location: 2 9738-30179 bp Feature: domain Description: DDE_Tnp_1_6 Location: 30809-31025 bp Feature: domain Description: DDE_Tnp_1_6 Location: 30809-3102 5 bp Feature: gene Location: 31381-32787 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31654-32386 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31654-32 386 bp Feature: domain Description: GIIM Note: maturase Location: 32461-32659 bp Feature: domain Description: GIIM Note: maturase Location: 32 461-32 659 bp Feature: gene Location: 33081-33452 bp Feature: gene Location: 33529-33711 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK15442 (beta-lactamase TEM; Provisional), COG3666 (Transposase ), DDE_Tnp_1_6 (pfam13751), RVT-GII, GIIM (pfam08388)