myRT

myRT report for GCA_013170145.1_ASM1317014v1

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Seq: SWIF01000012.1 Escherichia coli strain C3-05-03 contig_12_1, whole genome shotgun sequence (335250 bp)
Overview 1 RT 1: 66570-74039 bp Neighborhood of RT #1 [66570, 74056] Q RVT-Retrons RVT-AbiP2 Phage_GPA DUF5405 Feature: gene Location: 66570-67382 bp Feature: domain Description: Q Location: 66576-67377 bp Feature: domain Description: Q Location: 66576-67377 bp Feature: gene Location: 67425-68132 bp Feature: gene Location: 68129-69319 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 68279-68861 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 68279-68861 bp Feature: gene Location: 69688-69837 bp Feature: gene Location: 69854-71401 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 70271-70724 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 70271 -70724 bp Feature: gene Location: 71506-73653 bp Feature: domain Description: Phage_GPA Location: 71767-72754 bp Feature: domain Description: Phage_GPA Location: 71 767-72754 bp Feature: gene Location: 73781-74056 bp Feature: domain Description: DUF5405 Location: 73799-74039 bp Feature: domain Description: DUF5405 Location: 73799-74039 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Q (PHA02536), RVT-Retrons, RVT-AbiP2, Phage_GPA (pfam05840), DUF5405 (pfam17399)

Seq: SWIF01000043.1 Escherichia coli strain C3-05-03 contig_41_1, whole genome shotgun sequence (44418 bp)
Overview 1 RT 1: 96-4741 bp Neighborhood of RT #1 [96, 4741] InsE PHA02517 RVT-GII GIIM COG3666 DDE_Tnp_1_6 Feature: gene Location: 96-371 bp Feature: domain Description: InsE Location: 108-357 bp Feature: domain Description: InsE Location: 108-357 bp Feature: gene Location: 368-841 bp Feature: domain Description: PHA02517 Location: 458-776 bp Feature: domain Description: PHA02 517 Location: 458-776 bp Feature: gene Location: 1433-2839 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1706-2438 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1706-2 438 bp Feature: domain Description: GIIM Note: maturase Location: 2513-2711 bp Feature: domain Description: GIIM Note: maturase Location: 2 513-2 711 bp Feature: gene Location: 3184-4503 bp Feature: domain Description: COG3666 Location: 3205-3646 bp Feature: domain Description: COG3666 Location: 32 05-3646 bp Feature: domain Description: DDE_Tnp_1_6 Location: 4276-4492 bp Feature: domain Description: DDE_Tnp_1_6 Location: 42 76-4492 bp Feature: gene Location: 4517-4741 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), COG3666 (Transposase ), DDE_Tnp_1_6 (pfam13751)

Seq: SWIF01000094.1 Escherichia coli strain C3-05-03 contig_91_1, whole genome shotgun sequence (7347 bp)
Overview 1 RT 1: 236-4456 bp Neighborhood of RT #1 [236, 4456] RVT-UG7 PRK09692 Feature: gene Location: 236-376 bp Feature: gene Location: 486-1226 bp Feature: gene Location: 1223-2851 bp Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 1631-2060 bp Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 163 1-2060 bp Feature: gene Location: 2844-4028 bp Feature: domain Description: PRK09692 Location: 2850-4005 bp Feature: domain Description: PRK09692 Location: 2850-4005 bp Feature: gene Location: 4304-4456 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG7, PRK09692 (Integrase; provisional)