myRT

myRT report for GCA_013177065.1_ASM1317706v1

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Seq: JABLSU010000017.1 Pseudomonas aeruginosa strain S16 NODE_17_length_142958_cov_187.983, whole genome shotgun sequence (142958 bp)
Overview 1 RT 1: 46378-55222 bp Neighborhood of RT #1 [46378, 55230] NTP_transferase_like_1 COG3178 RVT_N RVT-GII YkfC HNH LptD PRK10770 Feature: gene Location: 46378-47052 bp Feature: domain Description: NTP_transferase_like_1 Location: 46384-47023 bp Feature: domain Description: NTP_transferase_like_1 Location: 46384-47023 bp Feature: gene Location: 47049-48065 bp Feature: domain Description: COG3178 Location: 47052-48051 bp Feature: domain Description: COG31 78 Location: 47052-48051 bp Feature: gene Location: 49338-51050 bp Feature: domain Description: RVT_N Location: 49395-49638 bp Feature: domain Description: RVT_N Location: 49395-49638 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 49683-50319 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 49683-5031 9 bp Feature: domain Description: YkfC Location: 50526-50679 bp Feature: domain Description: YkfC Location: 50526-50679 bp Feature: domain Description: HNH Note: nucleases Location: 50856-50994 bp Feature: domain Description: HNH Note: nucleases Location: 50856-50994 bp Feature: gene Location: 51183-53957 bp Feature: domain Description: LptD Location: 51378-53943 bp Feature: domain Description: LptD Location: 51 378-53943 bp Feature: gene Location: 54016-55230 bp Feature: domain Description: PRK10770 Location: 54028-55222 bp Feature: domain Description: PRK1 0770 Location: 54028-55222 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT NTP_transferase_like_1 (cd06422), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNH (pfam01844), LptD (COG1452), PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional)

Seq: JABLSU010000050.1 Pseudomonas aeruginosa strain S16 NODE_50_length_30144_cov_177.983, whole genome shotgun sequence (30144 bp)
Overview 1 RT 1: 419-2476 bp Neighborhood of RT #1 [419, 2673] RVT-UG7 RCL POD-like_MBL-fold Feature: gene Location: 419-1396 bp Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 422-614 bp Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 42 2 -614 bp Feature: gene Location: 1501-1749 bp Feature: domain Description: RCL Location: 1507-1723 bp Feature: domain Description: RCL Location: 1507-172 3 bp Feature: gene Location: 1870-2673 bp Feature: domain Description: POD-like_MBL-fold Location: 1885-2476 bp Feature: domain Description: POD-like_MBL-fold Location: 1885-2 476 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG7, RCL (COG3613), POD-like_MBL-fold (cd07724)

Seq: JABLSU010000088.1 Pseudomonas aeruginosa strain S16 NODE_88_length_5146_cov_306.956, whole genome shotgun sequence (5146 bp)
Overview 1 RT 1: 3-5075 bp Neighborhood of RT #1 [3, 5143] RVT-GII IS5 COG4584 DDE_Tnp_Tn3 Feature: gene Location: 3-962 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 216-873 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 216-873 bp Feature: gene Location: 1455-1994 bp Feature: domain Description: IS5 Location: 1644-1971 bp Feature: domain Description: IS5 Location: 1644-1971 bp Feature: gene Location: 2060-5143 bp Feature: domain Description: COG4584 Location: 2165-2714 bp Feature: domain Description: COG4584 Location: 2165-2714 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 3917-5075 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 3 917-5075 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, IS5 (COG3039), COG4584 (Transposase ), DDE_Tnp_Tn3 (pfam01526)