myRT

myRT report for GCA_013177105.1_ASM1317710v1

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Seq: JABLSX010000012.1 Pseudomonas aeruginosa strain S13 NODE_12_length_150180_cov_115.609, whole genome shotgun sequence (150180 bp)
Overview 1 RT 1: 33466-39325 bp Neighborhood of RT #1 [33466, 39325] conj_PilL KOG0389 SF2_C_SNF RVT_N RVT-GII YkfC HNHc DEXHc_Snf Feature: gene Location: 33466-33990 bp Feature: domain Description: conj_PilL Location: 33574-33883 bp Feature: domain Description: conj_PilL Location: 33574-33883 bp Feature: gene Location: 34204-35571 bp Feature: domain Description: KOG0389 Location: 34336-34465 bp Feature: domain Description: KOG0389 Location: 34336-34465 bp Feature: domain Description: SF2_C_SNF Location: 35011-35407 bp Feature: domain Description: SF2_C_SNF Location: 3501 1 -35407 bp Feature: gene Location: 35666-37171 bp Feature: RT Description: RVT_N Location: 35669-35771 bp Feature: RT Description: RVT_N Location: 35669-35771 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 35816-36458 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3581 6-36458 bp Feature: domain Description: YkfC Location: 36458-36767 bp Feature: domain Description: YkfC Location: 36458-36767 bp Feature: domain Description: HNHc Note: nucleases Location: 36962-37124 bp Feature: domain Description: HNHc Note: nucleases Location: 36962-371 24 bp Feature: gene Location: 37963-38883 bp Feature: domain Description: DEXHc_Snf Location: 38182-38437 bp Feature: domain Description: DEXHc_Snf Location: 381 82-38437 bp Feature: gene Location: 39020-39325 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT conj_PilL (TIGR03748), KOG0389 (KOG0389, SNF2 family DNA-dependent ATPase ), SF2_C_SNF (cd18793), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNHc (smart00507), DEXHc_Snf (cd17919)

Seq: JABLSX010000005.1 Pseudomonas aeruginosa strain S13 NODE_5_length_325913_cov_110.69, whole genome shotgun sequence (325913 bp)
Overview 1 RT 1: 289791-300099 bp 2 RT 2: 316357-325198 bp Neighborhood of RT #1 [289791, 300101] COG3177 RVT_N RVT-GII GIIM HNH PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 PRK05658 Neighborhood of RT #2 [316357, 325227] PRK10770 LptD RVT_N RVT-GII YkfC HNH COG3178 NTP_transferase_like_1 Feature: gene Location: 289791-290912 bp Feature: domain Description: COG3177 Location: 289809-290901 bp Feature: domain Description: COG3177 Location: 2 89809-2 90901 bp Feature: gene Location: 291174-291335 bp Feature: gene Location: 291638-293323 bp Feature: RT Description: RVT_N Location: 291695-291935 bp Feature: RT Description: RVT_N Location: 2 91695-2 91935 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 291983-292619 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 91983-2 92 619 bp Feature: domain Description: GIIM Note: maturase Location: 292673-292904 bp Feature: domain Description: GIIM Note: maturase Location: 2 92 673-2 92 904 bp Feature: domain Description: HNH Note: nucleases Location: 293156-293294 bp Feature: domain Description: HNH Note: nucleases Location: 2 93156-2 932 94 bp Feature: gene Location: 294404-298141 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 294512-295169 bp Feature: domain Description: PBP2 _BvgS_HisK_like Location: 2 94512 -2 95169 bp Feature: domain Description: PRK09776 Location: 295382-295853 bp Feature: domain Description: PRK09776 Location: 2 95382 -2 95853 bp Feature: domain Description: PAS Location: 295904-296435 bp Feature: domain Description: PAS Location: 2 95904-2 96435 bp Feature: domain Description: PRK10060 Location: 296444-298091 bp Feature: domain Description: PRK10060 Location: 2 96444-2 98091 bp Feature: gene Location: 298248-300101 bp Feature: domain Description: PRK05658 Location: 298260-300099 bp Feature: domain Description: PRK05658 Location: 2 982 60-300099 bp Feature: gene Location: 316357-317571 bp Feature: domain Description: PRK10770 Location: 316369-317563 bp Feature: domain Description: PRK10770 Location: 316369-317563 bp Feature: gene Location: 317630-320422 bp Feature: domain Description: LptD Location: 317825-320408 bp Feature: domain Description: LptD Location: 31782 5-32 0408 bp Feature: gene Location: 320555-322267 bp Feature: RT Description: RVT_N Location: 320612-320855 bp Feature: RT Description: RVT_N Location: 32 0612 -32 0855 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 320900-321536 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 32 0900-32 1536 bp Feature: domain Description: YkfC Location: 321743-321896 bp Feature: domain Description: YkfC Location: 32 1743-32 1896 bp Feature: domain Description: HNH Note: nucleases Location: 322073-322211 bp Feature: domain Description: HNH Note: nucleases Location: 32 2 073-32 2 2 11 bp Feature: gene Location: 323540-324556 bp Feature: domain Description: COG3178 Location: 323543-324542 bp Feature: domain Description: COG3178 Location: 32 3543-32 4542 bp Feature: gene Location: 324553-325227 bp Feature: domain Description: NTP_transferase_like_1 Location: 324559-325198 bp Feature: domain Description: NTP_transferase_like_1 Location: 32 4559-32 5198 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3177 (Fic family protein ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), PRK05658 (RNA polymerase sigma factor RpoD; Validated)
PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), LptD (COG1452), YkfC (COG3344), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), NTP_transferase_like_1 (cd06422)