myRT

myRT report for GCA_013177715.1_ASM1317771v1

Download annotations/find similar RTs

Seq: WVHR01000157.1 Paraburkholderia sp. RL16-012-BIC-B NODE_157_length_2292_cov_65.466513, whole genome shotgun sequence (2292 bp)
Overview 1 RT 1: 1-1953 bp Neighborhood of RT #1 [1, 2222] RVT-GII GIIM Feature: gene Location: 1-273 bp Feature: gene Location: 669-2222 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 942-1680 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 942-1 680 bp Feature: domain Description: GIIM Note: maturase Location: 1791-1953 bp Feature: domain Description: GIIM Note: maturase Location: 1 791 -1 953 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: WVHR01000162.1 Paraburkholderia sp. RL16-012-BIC-B NODE_162_length_1914_cov_40.136542, whole genome shotgun sequence (1914 bp)
Overview 1 RT 1: 75-1753 bp Neighborhood of RT #1 [75, 1753] RVT-GII Feature: gene Location: 75-1553 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 486-1173 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 486-1173 bp Feature: gene Location: 1592-1753 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: WVHR01000163.1 Paraburkholderia sp. RL16-012-BIC-B NODE_163_length_1876_cov_98.320183, whole genome shotgun sequence (1876 bp)
Overview 1 RT 1: 90-1685 bp Neighborhood of RT #1 [90, 1685] RVT-GII GIIM Feature: gene Location: 90-1457 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 417-1038 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 417-103 8 bp Feature: domain Description: GIIM Note: maturase Location: 1089-1299 bp Feature: domain Description: GIIM Note: maturase Location: 1089-1299 bp Feature: gene Location: 1473-1685 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: WVHR01000001.1 Paraburkholderia sp. RL16-012-BIC-B NODE_1_length_305736_cov_16.254489, whole genome shotgun sequence (305736 bp)
Overview 1 RT 1: 251542-257691 bp Neighborhood of RT #1 [251542, 257747] ilvH PRK05479 RVT_N RVT-GII GIIM HNHc PRK05305 PssA Feature: gene Location: 251542-252033 bp Feature: domain Description: ilvH Location: 251545-252022 bp Feature: domain Description: ilvH Location: 25154 5-252022 bp Feature: gene Location: 252209-253225 bp Feature: domain Description: PRK05479 Location: 252212-253193 bp Feature: domain Description: PRK054 79 Location: 252212-253193 bp Feature: gene Location: 254496-256097 bp Feature: RT Description: RVT_N Location: 254499-254697 bp Feature: RT Description: RVT_N Location: 254 4 99-254 697 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 254742-255390 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 254 74 2-255390 bp Feature: domain Description: GIIM Note: maturase Location: 255441-255675 bp Feature: domain Description: GIIM Note: maturase Location: 2554 4 1-255675 bp Feature: domain Description: HNHc Note: nucleases Location: 255918-256059 bp Feature: domain Description: HNHc Note: nucleases Location: 255918-256059 bp Feature: gene Location: 256215-256853 bp Feature: domain Description: PRK05305 Location: 256239-256848 bp Feature: domain Description: PRK05305 Location: 256239-25684 8 bp Feature: gene Location: 256878-257747 bp Feature: domain Description: PssA Location: 257010-257691 bp Feature: domain Description: PssA Location: 257010-257691 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ilvH (PRK11895), PRK05479 (ketol-acid reductoisomerase; Provisional), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), PRK05305 (phosphatidylserine decarboxylase family protein), PssA (COG1183)

Seq: WVHR01000032.1 Paraburkholderia sp. RL16-012-BIC-B NODE_32_length_112864_cov_19.694280, whole genome shotgun sequence (112864 bp)
Overview 1 RT 1: 43245-48987 bp Neighborhood of RT #1 [43245, 48987] acid_phos_Burk COG2343 RVT-Retrons HTH_XRE Feature: gene Location: 43245-44825 bp Feature: domain Description: acid_phos_Burk Location: 43353-44817 bp Feature: domain Description: acid_phos_Burk Location: 4335 3-44817 bp Feature: gene Location: 45070-45453 bp Feature: domain Description: COG2343 Location: 45100-45436 bp Feature: domain Description: COG2343 Location: 45 100-45 436 bp Feature: gene Location: 45914-47671 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 46058-46685 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4605 8-46685 bp Feature: gene Location: 48052-48369 bp Feature: domain Description: HTH_XRE Location: 48085-48268 bp Feature: domain Description: HTH_XRE Location: 48085 -48268 bp Feature: gene Location: 48628-48987 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT acid_phos_Burk (TIGR03397), COG2343 (Uncharacterized conserved protein, DUF427 family ), RVT-Retrons, HTH_XRE (smart00530)

Seq: WVHR01000003.1 Paraburkholderia sp. RL16-012-BIC-B NODE_3_length_286077_cov_19.116457, whole genome shotgun sequence (286077 bp)
Overview 1 RT 1: 105590-110073 bp Neighborhood of RT #1 [105590, 110073] COG4924 RVT-Retrons Feature: gene Location: 105590-106765 bp Feature: domain Description: COG4924 Location: 105599-106763 bp Feature: domain Description: COG4924 Location: 105599-106 76 3 bp Feature: gene Location: 106825-106962 bp Feature: gene Location: 107061-108518 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 107640-108279 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1076 40-108279 bp Feature: gene Location: 108591-109292 bp Feature: gene Location: 109336-110073 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG4924 (Uncharacterized protein ), RVT-Retrons

Seq: WVHR01000004.1 Paraburkholderia sp. RL16-012-BIC-B NODE_4_length_249633_cov_17.113969, whole genome shotgun sequence (249633 bp)
Overview 1 RT 1: 71348-79563 bp Neighborhood of RT #1 [71348, 79565] pgsA uvrC RVT_N RVT-GII GIIM HNHc EarP PRK00529 Feature: gene Location: 71348-72139 bp Feature: domain Description: pgsA Location: 71555-72116 bp Feature: domain Description: pgsA Location: 7 1555-7 2116 bp Feature: gene Location: 72140-74344 bp Feature: domain Description: uvrC Location: 72179-74342 bp Feature: domain Description: uvrC Location: 7 217 9-7 4342 bp Feature: gene Location: 74536-76236 bp Feature: RT Description: RVT_N Location: 74593-74836 bp Feature: RT Description: RVT_N Location: 7 4593-7 4836 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 74881-75529 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7 4881-7 5529 bp Feature: domain Description: GIIM Note: maturase Location: 75583-75814 bp Feature: domain Description: GIIM Note: maturase Location: 7 5583-7 5814 bp Feature: domain Description: HNHc Note: nucleases Location: 76045-76198 bp Feature: domain Description: HNHc Note: nucleases Location: 7 6045-7 6198 bp Feature: gene Location: 77540-78742 bp Feature: domain Description: EarP Location: 77609-78725 bp Feature: domain Description: EarP Location: 7 7 609-7 87 25 bp Feature: gene Location: 79008-79565 bp Feature: domain Description: PRK00529 Location: 79011-79563 bp Feature: domain Description: PRK00529 Location: 7 9011-7 9563 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT pgsA (TIGR00560), uvrC (TIGR00194), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), EarP (TIGR03837), PRK00529 (elongation factor P; Validated)

Seq: WVHR01000081.1 Paraburkholderia sp. RL16-012-BIC-B NODE_81_length_31062_cov_15.835461, whole genome shotgun sequence (31062 bp)
Overview 1 RT 1: 22549-28821 bp Neighborhood of RT #1 [22549, 28850] INT_RitB_C_like Phage_int_SAM_1 INT_RitC_C_like RVT_N RVT-GII GIIM HNHc LRAT HDAC_classII_2 Feature: gene Location: 22549-23487 bp Feature: domain Description: INT_RitB_C_like Location: 22858-23455 bp Feature: domain Description: INT_RitB_C_like Location: 228 58 -23455 bp Feature: gene Location: 23480-24475 bp Feature: domain Description: Phage_int_SAM_1 Location: 23528-23768 bp Feature: domain Description: Phage_int_SAM_1 Location: 23528 -23768 bp Feature: domain Description: INT_RitC_C_like Location: 23861-24395 bp Feature: domain Description: INT_RitC_C_like Location: 238 61-24395 bp Feature: gene Location: 24585-26465 bp Feature: RT Description: RVT_N Location: 24804-25041 bp Feature: RT Description: RVT_N Location: 248 04-25041 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 25092-25743 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 25092-25743 bp Feature: domain Description: GIIM Note: maturase Location: 25794-26028 bp Feature: domain Description: GIIM Note: maturase Location: 25794-26028 bp Feature: domain Description: HNHc Note: nucleases Location: 26259-26418 bp Feature: domain Description: HNHc Note: nucleases Location: 26259-26418 bp Feature: gene Location: 27090-27671 bp Feature: domain Description: LRAT Location: 27165-27471 bp Feature: domain Description: LRAT Location: 27165-27471 bp Feature: gene Location: 27894-28850 bp Feature: domain Description: HDAC_classII_2 Location: 27957-28821 bp Feature: domain Description: HDAC_classII_2 Location: 27957-28 8 21 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT INT_RitB_C_like (cd00797), Phage_int_SAM_1 (pfam02899), INT_RitC_C_like (cd01182), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), LRAT (pfam04970), HDAC_classII_2 (cd11599)