myRT

myRT report for GCA_013177735.1_ASM1317773v1

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Seq: WOEZ01000010.1 Paraburkholderia sp. 5N id=10, whole genome shotgun sequence (69889 bp)
Overview 1 RT 1: 3-3390 bp Neighborhood of RT #1 [3, 3410] INT_RitC_C_like rve RVT-GII GIIM DDE_5 DDE_Tnp_1_6 Feature: gene Location: 3-179 bp Feature: domain Description: INT_RitC_C_like Location: 9-99 bp Feature: domain Description: INT_RitC_C_like Location: 9-99 bp Feature: gene Location: 311-1036 bp Feature: domain Description: rve Location: 437-734 bp Feature: domain Description: rve Location: 437-734 bp Feature: gene Location: 1176-2483 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1431-2085 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 431 -2085 bp Feature: domain Description: GIIM Note: maturase Location: 2163-2391 bp Feature: domain Description: GIIM Note: maturase Location: 21 63-2391 bp Feature: gene Location: 2460-2705 bp Feature: gene Location: 2979-3410 bp Feature: domain Description: DDE_5 Location: 3033-3150 bp Feature: domain Description: DDE_5 Location: 3033-31 50 bp Feature: domain Description: DDE_Tnp_1_6 Location: 3162-3390 bp Feature: domain Description: DDE_Tnp_1 _6 Location: 31 62-3390 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT INT_RitC_C_like (cd01182), rve (pfam00665), RVT-GII, GIIM (pfam08388), DDE_5 (pfam13546), DDE_Tnp_1_6 (pfam13751)

Seq: WOEZ01000110.1 Paraburkholderia sp. 5N id=110, whole genome shotgun sequence (2445 bp)
Overview 1 RT 1: 177-1500 bp Neighborhood of RT #1 [177, 1500] RVT-GII group_II_RT_mat Feature: gene Location: 177-902 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 243-834 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 43-834 bp Feature: gene Location: 836-1261 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 854-1139 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 854-1139 bp Feature: gene Location: 1258-1500 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, group_II_RT_mat (TIGR04416)

Seq: WOEZ01000131.1 Paraburkholderia sp. 5N id=131, whole genome shotgun sequence (25302 bp)
Overview 1 RT 1: 5649-8639 bp Neighborhood of RT #1 [5649, 8639] DUF3455 RVT-GII Rve Feature: gene Location: 5649-6161 bp Feature: domain Description: DUF3455 Location: 5760-6159 bp Feature: domain Description: DUF3 455 Location: 5760-6159 bp Feature: gene Location: 6703-6906 bp Feature: gene Location: 7595-7921 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7850-7919 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7850-7919 bp Feature: gene Location: 7931-8347 bp Feature: domain Description: Rve Location: 7934-8261 bp Feature: domain Description: Rve Location: 793 4-8261 bp Feature: gene Location: 8430-8639 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF3455 (pfam11937), RVT-GII, Rve (COG3316)

Seq: WOEZ01000198.1 Paraburkholderia sp. 5N id=200, whole genome shotgun sequence (11339 bp)
Overview 1 RT 1: 1-3001 bp Neighborhood of RT #1 [1, 3001] cztR_silR_copR RVT-GII GIIM DUF5372 Feature: gene Location: 1-516 bp Feature: domain Description: cztR_silR_copR Location: 43-514 bp Feature: domain Description: cztR_silR_copR Location: 4 3-514 bp Feature: gene Location: 1211-1402 bp Feature: gene Location: 1412-2311 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1427-2033 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14 27-2033 bp Feature: domain Description: GIIM Note: maturase Location: 2084-2303 bp Feature: domain Description: GIIM Note: maturase Location: 2084 -2303 bp Feature: gene Location: 2329-2616 bp Feature: domain Description: DUF5372 Location: 2347-2578 bp Feature: domain Description: DUF5372 Location: 234 7-2578 bp Feature: gene Location: 2669-3001 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT cztR_silR_copR (TIGR01387), RVT-GII, GIIM (pfam08388), DUF5372 (pfam17342)

Seq: WOEZ01000250.1 Paraburkholderia sp. 5N id=252, whole genome shotgun sequence (20059 bp)
Overview 1 RT 1: 6615-15672 bp Neighborhood of RT #1 [6615, 15683] COG5361 RVT-GII RVT-GII RVT-GII HAD ECM27 Feature: gene Location: 6615-8039 bp Feature: domain Description: COG5361 Location: 6666-8028 bp Feature: domain Description: COG5 361 Location: 6666-8028 bp Feature: gene Location: 8076-8891 bp Feature: gene Location: 8951-9760 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9071-9392 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9071-9392 bp Feature: gene Location: 9766-11061 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10021-10714 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10021-10714 bp Feature: gene Location: 11520-12230 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11748-12171 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11748-12171 bp Feature: gene Location: 13522-14580 bp Feature: domain Description: HAD Location: 13750-14362 bp Feature: domain Description: HAD Location: 1375 0-14362 bp Feature: gene Location: 14673-15683 bp Feature: domain Description: ECM27 Location: 14688-15672 bp Feature: domain Description: ECM27 Location: 14688-15 672 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG5361 (Uncharacterized conserved protein ), RVT-GII, HAD (pfam12710), ECM27 (COG0530)

Seq: WOEZ01000260.1 Paraburkholderia sp. 5N id=262, whole genome shotgun sequence (64767 bp)
Overview 1 RT 1: 5284-9298 bp Neighborhood of RT #1 [5284, 9298] MFS_PcaK_like Rve RVT-GII GIIM Feature: gene Location: 5284-6657 bp Feature: domain Description: MFS_PcaK_like Location: 5362-6568 bp Feature: domain Description: MFS_PcaK_like Location: 536 2-6 56 8 bp Feature: gene Location: 6759-7301 bp Feature: domain Description: Rve Location: 6846-7245 bp Feature: domain Description: Rve Location: 6 846 -7245 bp Feature: gene Location: 7294-8547 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7507-8164 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7507-816 4 bp Feature: domain Description: GIIM Note: maturase Location: 8242-8467 bp Feature: domain Description: GIIM Note: maturase Location: 8242-846 7 bp Feature: gene Location: 8674-8892 bp Feature: gene Location: 9113-9298 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MFS_PcaK_like (cd17365), Rve (COG3316), RVT-GII, GIIM (pfam08388)

Seq: WOEZ01000293.1 Paraburkholderia sp. 5N id=296, whole genome shotgun sequence (74121 bp)
Overview 1 RT 1: 715-5492 bp Neighborhood of RT #1 [715, 5492] DUF5372 RVT-GII GIIM HTH_29 Tra5 RVT-GII GIIM Feature: gene Location: 715-1047 bp Feature: gene Location: 1100-1387 bp Feature: domain Description: DUF5372 Location: 1118-1349 bp Feature: domain Description: DUF537 2 Location: 1118-1349 bp Feature: gene Location: 1417-2067 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1423-2041 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1423-2041 bp Feature: gene Location: 2085-2429 bp Feature: domain Description: GIIM Note: maturase Location: 2127-2346 bp Feature: domain Description: GIIM Note: maturase Location: 2127 -2346 bp Feature: gene Location: 2520-3578 bp Feature: domain Description: HTH_29 Location: 2541-2733 bp Feature: domain Description: HTH_29 Location: 2541-27 33 bp Feature: domain Description: Tra5 Location: 2787-3426 bp Feature: domain Description: Tra5 Location: 27 87 -3426 bp Feature: gene Location: 3649-4956 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3904-4558 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3904-4558 bp Feature: domain Description: GIIM Note: maturase Location: 4636-4864 bp Feature: domain Description: GIIM Note: maturase Location: 4636-4864 bp Feature: gene Location: 4933-5178 bp Feature: gene Location: 5328-5492 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF5372 (pfam17342), RVT-GII, GIIM (pfam08388), HTH_29 (pfam13551), Tra5 (COG2801)

Seq: WOEZ01000030.1 Paraburkholderia sp. 5N id=30, whole genome shotgun sequence (27664 bp)
Overview 1 RT 1: 24385-27151 bp Neighborhood of RT #1 [24385, 27546] PAS_8 RVT_N RVT-GII GIIM Feature: gene Location: 24385-25335 bp Feature: domain Description: PAS_8 Location: 25138-25288 bp Feature: domain Description: PAS_8 Location: 25138 -2528 8 bp Feature: gene Location: 25370-25651 bp Feature: gene Location: 25897-27546 bp Feature: domain Description: RVT_N Location: 25942-26185 bp Feature: domain Description: RVT_N Location: 25942-2618 5 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26230-26866 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26230-268 66 bp Feature: domain Description: GIIM Note: maturase Location: 26917-27151 bp Feature: domain Description: GIIM Note: maturase Location: 26917-27151 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PAS_8 (pfam13188), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: WOEZ01000312.1 Paraburkholderia sp. 5N id=315, whole genome shotgun sequence (16683 bp)
Overview 1 RT 1: 14146-16126 bp Neighborhood of RT #1 [14146, 16680] YhhI RVT-GII GIIM HNHc Zn_ribbon_recom Feature: gene Location: 14146-14319 bp Feature: gene Location: 14386-14838 bp Feature: domain Description: YhhI Location: 14590-14758 bp Feature: domain Description: YhhI Location: 1459 0-14758 bp Feature: gene Location: 15027-16040 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15096-15372 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1509 6-15372 bp Feature: domain Description: GIIM Note: maturase Location: 15423-15657 bp Feature: domain Description: GIIM Note: maturase Location: 15423-15657 bp Feature: domain Description: HNHc Note: nucleases Location: 15879-16032 bp Feature: domain Description: HNHc Note: nucleases Location: 15879 -16032 bp Feature: gene Location: 15943-16680 bp Feature: domain Description: Zn_ribbon_recom Location: 15946-16126 bp Feature: domain Description: Zn_ribbon_recom Location: 159 46-16126 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YhhI (COG5433), RVT-GII, GIIM (pfam08388), HNHc (smart00507), Zn_ribbon_recom (pfam13408)

Seq: WOEZ01000343.1 Paraburkholderia sp. 5N id=349, whole genome shotgun sequence (1994 bp)
Overview 1 RT 1: 3-1740 bp Neighborhood of RT #1 [3, 1808] RVT-GII GIIM Feature: gene Location: 3-308 bp Feature: gene Location: 543-1808 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 792-1455 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 792-1455 bp Feature: domain Description: GIIM Note: maturase Location: 1524-1740 bp Feature: domain Description: GIIM Note: maturase Location: 1524-1740 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: WOEZ01000062.1 Paraburkholderia sp. 5N id=62, whole genome shotgun sequence (5481 bp)
Overview 1 RT 1: 154-5287 bp Neighborhood of RT #1 [154, 5334] DUF3274 DUF2875 RVT-Retrons Resolvase Feature: gene Location: 154-2016 bp Feature: domain Description: DUF3274 Location: 1018-1900 bp Feature: domain Description: DUF3274 Location: 1018-1900 bp Feature: gene Location: 2013-3713 bp Feature: domain Description: DUF2875 Location: 2337-3699 bp Feature: domain Description: DUF2875 Location: 2337-3699 bp Feature: gene Location: 3801-4325 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3807-4041 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3807-4041 bp Feature: gene Location: 4430-4759 bp Feature: gene Location: 4903-5334 bp Feature: domain Description: Resolvase Location: 4915-5287 bp Feature: domain Description: Resolvase Location: 4915-5287 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF3274 (pfam11678), DUF2875 (pfam11394), RVT-Retrons, Resolvase (smart00857)

Seq: WOEZ01000085.1 Paraburkholderia sp. 5N id=85, whole genome shotgun sequence (7982 bp)
Overview 1 RT 1: 2358-4829 bp Neighborhood of RT #1 [2358, 4840] AtoA INT_XerDC_C RVT-GII GIIM DDE_Tnp_1_2 Feature: gene Location: 2358-2501 bp Feature: domain Description: AtoA Location: 2361-2487 bp Feature: domain Description: AtoA Location: 2361-2487 bp Feature: gene Location: 2529-3029 bp Feature: domain Description: INT_XerDC_C Location: 2721-2910 bp Feature: domain Description: INT_XerDC_C Location: 2721-2910 bp Feature: gene Location: 3156-3887 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3225-3372 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3225-3372 bp Feature: domain Description: GIIM Note: maturase Location: 3423-3657 bp Feature: domain Description: GIIM Note: maturase Location: 3423-3657 bp Feature: gene Location: 3974-4102 bp Feature: gene Location: 4220-4840 bp Feature: domain Description: DDE_Tnp_1_2 Location: 4553-4829 bp Feature: domain Description: DDE_Tnp_1_2 Location: 4553-4829 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AtoA (COG2057), INT_XerDC_C (cd00798), RVT-GII, GIIM (pfam08388), DDE_Tnp_1_2 (pfam13586)