myRT

myRT report for GCA_013178125.1_ASM1317812v1

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Seq: JABLXJ010000013.1 Firmicutes bacterium isolate Ch40 contig13, whole genome shotgun sequence (72219 bp)
Overview 1 RT 1: 59356-64969 bp Neighborhood of RT #1 [59356, 64969] AAA_15 TOPRIM_OLD RVT-Retrons WcaG WcaG Feature: gene Location: 59356-61548 bp Feature: domain Description: AAA_15 Location: 59422-60631 bp Feature: domain Description: AAA_1 5 Location: 59422-60631 bp Feature: domain Description: TOPRIM_OLD Location: 60790-61021 bp Feature: domain Description: TOPRIM_OLD Location: 60790-61 021 bp Feature: gene Location: 61971-62912 bp Feature: gene Location: 62909-63874 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 63011-63578 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 6301 1 -63578 bp Feature: gene Location: 64184-64465 bp Feature: domain Description: WcaG Location: 64202-64274 bp Feature: domain Description: WcaG Location: 64202-64274 bp Feature: domain Description: WcaG Location: 64334-64424 bp Feature: domain Description: WcaG Location: 64334-64424 bp Feature: gene Location: 64520-64969 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AAA_15 (pfam13175), TOPRIM_OLD (cd01026), RVT-Retrons, WcaG (COG0451)

Seq: JABLXJ010000005.1 Firmicutes bacterium isolate Ch40 contig5, whole genome shotgun sequence (209951 bp)
Overview 1 RT 1: 183653-188410 bp Neighborhood of RT #1 [183653, 188529] nucleoid_noc BcsQ RVT-GII GIIM nucleoid_noc Feature: gene Location: 183653-184510 bp Feature: domain Description: nucleoid_noc Location: 183728-184310 bp Feature: domain Description: nucleoid_noc Location: 18372 8-184310 bp Feature: gene Location: 184515-185372 bp Feature: domain Description: BcsQ Location: 184620-185328 bp Feature: domain Description: BcsQ Location: 18462 0-18532 8 bp Feature: gene Location: 185443-186786 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 185929-186394 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18592 9-186394 bp Feature: domain Description: GIIM Note: maturase Location: 186472-186694 bp Feature: domain Description: GIIM Note: maturase Location: 186472 -186694 bp Feature: gene Location: 186989-187300 bp Feature: gene Location: 187507-188529 bp Feature: domain Description: nucleoid_noc Location: 187627-188410 bp Feature: domain Description: nucleoid_noc Location: 18762 7-188410 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT nucleoid_noc (TIGR04285), BcsQ (COG1192), RVT-GII, GIIM (pfam08388)