myRT

myRT report for GCA_013178275.1_ASM1317827v1

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Seq: JABLWZ010000025.1 Firmicutes bacterium isolate Ch109 contig25, whole genome shotgun sequence (74790 bp)
Overview 1 RT 1: 62090-67973 bp Neighborhood of RT #1 [62090, 67990] porA PRK11865 RVT-GII RocR Feature: gene Location: 62090-63334 bp Feature: domain Description: porA Location: 62168-63326 bp Feature: domain Description: porA Location: 621 68-63326 bp Feature: gene Location: 63337-64200 bp Feature: domain Description: PRK11865 Location: 63361-64192 bp Feature: domain Description: PRK1 1 865 Location: 63361 -641 92 bp Feature: gene Location: 64342-65925 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 64843-65533 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 64843-65533 bp Feature: gene Location: 65726-66025 bp Feature: gene Location: 66557-67990 bp Feature: domain Description: RocR Location: 66575-67973 bp Feature: domain Description: RocR Location: 66575-67973 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT porA (PRK09622), PRK11865 (pyruvate synthase subunit beta), RVT-GII, RocR (COG3829)

Seq: JABLWZ010000003.1 Firmicutes bacterium isolate Ch109 contig3, whole genome shotgun sequence (230298 bp)
Overview 1 RT 1: 61071-65812 bp 2 RT 2: 132955-136487 bp 3 RT 3: 148871-152498 bp Neighborhood of RT #1 [61071, 65880] RVT-GII HNHc VirD4 HTH_36 Neighborhood of RT #2 [132955, 136516] Avd_like RVT-DGRs RVT-DGRs PBP1_allose_binding Indigoidine_A Neighborhood of RT #3 [148871, 152498] FdhE RVT-GII GIIM Feature: gene Location: 61071-61535 bp Feature: gene Location: 61567-61872 bp Feature: gene Location: 62183-64039 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 62477-63185 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 62 477-63185 bp Feature: domain Description: HNHc Note: nucleases Location: 63800-63968 bp Feature: domain Description: HNHc Note: nucleases Location: 63800-63968 bp Feature: gene Location: 64096-65613 bp Feature: domain Description: VirD4 Location: 64222-65332 bp Feature: domain Description: VirD4 Location: 642 2 2 -65332 bp Feature: gene Location: 65626-65880 bp Feature: domain Description: HTH_36 Location: 65656-65812 bp Feature: domain Description: HTH_36 Location: 65656-65812 bp Feature: gene Location: 132955-133296 bp Feature: domain Description: Avd_like Location: 132973-133285 bp Feature: domain Description: Avd_like Location: 132 973-1332 85 bp Feature: gene Location: 133306-133449 bp Feature: gene Location: 133609-133983 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 133822-133978 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 13382 2 -133978 bp Feature: gene Location: 134113-134739 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 134116-134482 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 134116-134482 bp Feature: gene Location: 134860-135684 bp Feature: domain Description: PBP1_allose_binding Location: 134863-135661 bp Feature: domain Description: PBP1_allose_binding Location: 134863-135661 bp Feature: gene Location: 135668-136516 bp Feature: domain Description: Indigoidine_A Location: 135887-136487 bp Feature: domain Description: Indigoidine_A Location: 135887-136487 bp Feature: gene Location: 148871-149713 bp Feature: domain Description: FdhE Location: 148907-149675 bp Feature: domain Description: FdhE Location: 148907-149675 bp Feature: gene Location: 149785-150348 bp Feature: gene Location: 150517-151764 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 150721-151378 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15072 1-151378 bp Feature: domain Description: GIIM Note: maturase Location: 151459-151690 bp Feature: domain Description: GIIM Note: maturase Location: 151459-151690 bp Feature: gene Location: 152126-152269 bp Feature: gene Location: 152349-152498 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, HNHc (smart00507), VirD4 (COG3505), HTH_36 (pfam13730), Avd_like (cd16376), RVT-DGRs, PBP1_allose_binding (cd06320), Indigoidine_A (pfam04227), FdhE (TIGR01562), GIIM (pfam08388)

Seq: JABLWZ010000008.1 Firmicutes bacterium isolate Ch109 contig8, whole genome shotgun sequence (233633 bp)
Overview 1 RT 1: 58094-64057 bp Neighborhood of RT #1 [58094, 64065] CaiB RVT-GII GIIM SCAD_SBCAD SCAD_SBCAD Feature: gene Location: 58094-59290 bp Feature: domain Description: CaiB Location: 58103-59279 bp Feature: domain Description: CaiB Location: 58103 -59279 bp Feature: gene Location: 59461-59688 bp Feature: gene Location: 59829-61166 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 60159-60792 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 60159-60792 bp Feature: domain Description: GIIM Note: maturase Location: 60882-61104 bp Feature: domain Description: GIIM Note: maturase Location: 60882-61104 bp Feature: gene Location: 61738-62889 bp Feature: domain Description: SCAD_SBCAD Location: 61762-62866 bp Feature: domain Description: SCAD_SBCAD Location: 61762-62866 bp Feature: gene Location: 62920-64065 bp Feature: domain Description: SCAD_SBCAD Location: 62947-64057 bp Feature: domain Description: SCAD_SBCAD Location: 62947-64057 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CaiB (COG1804), RVT-GII, GIIM (pfam08388), SCAD_SBCAD (cd01158)