myRT

myRT report for GCA_013178475.1_ASM1317847v1

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Seq: JABLUI010000008.1 Pseudomonas aeruginosa strain PASP352 NODE_8_length_285679_cov_70.7184, whole genome shotgun sequence (285679 bp)
Overview 1 RT 1: 49572-58452 bp 2 RT 2: 74717-85011 bp Neighborhood of RT #1 [49572, 58460] NTP_transferase_like_1 COG3178 RVT_N RVT-GII YkfC HNH LptD PRK10770 Neighborhood of RT #2 [74717, 85022] PRK05658 PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 RVT_N RVT-GII GIIM HNH COG3177 Feature: gene Location: 49572-50246 bp Feature: domain Description: NTP_transferase_like_1 Location: 49578-50217 bp Feature: domain Description: NTP_transferase_like_1 Location: 49578-5021 7 bp Feature: gene Location: 50243-51259 bp Feature: domain Description: COG3178 Location: 50246-51245 bp Feature: domain Description: COG31 78 Location: 50246-51 245 bp Feature: gene Location: 52532-54244 bp Feature: RT Description: RVT_N Location: 52589-52832 bp Feature: RT Description: RVT_N Location: 52589-52832 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 52877-53513 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 52877-5351 3 bp Feature: domain Description: YkfC Location: 53720-53873 bp Feature: domain Description: YkfC Location: 53720-53873 bp Feature: domain Description: HNH Note: nucleases Location: 54050-54188 bp Feature: domain Description: HNH Note: nucleases Location: 54050-541 88 bp Feature: gene Location: 54377-57187 bp Feature: domain Description: LptD Location: 54572-57173 bp Feature: domain Description: LptD Location: 54572-571 73 bp Feature: gene Location: 57246-58460 bp Feature: domain Description: PRK10770 Location: 57258-58452 bp Feature: domain Description: PRK1 0770 Location: 57258-58452 bp Feature: gene Location: 74717-76570 bp Feature: domain Description: PRK05658 Location: 74729-76568 bp Feature: domain Description: PRK05658 Location: 74729-76568 bp Feature: gene Location: 76677-80414 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 76785-77442 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 76785-77442 bp Feature: domain Description: PRK09776 Location: 77655-78126 bp Feature: domain Description: PRK09776 Location: 77655-781 26 bp Feature: domain Description: PAS Location: 78171-78708 bp Feature: domain Description: PAS Location: 781 71 -78708 bp Feature: domain Description: PRK10060 Location: 78717-80364 bp Feature: domain Description: PRK1 0060 Location: 7871 7-80364 bp Feature: gene Location: 81495-83180 bp Feature: RT Description: RVT_N Location: 81552-81792 bp Feature: RT Description: RVT_N Location: 81 552-81 792 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 81840-82476 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 81 840-82476 bp Feature: domain Description: GIIM Note: maturase Location: 82530-82761 bp Feature: domain Description: GIIM Note: maturase Location: 82530-82761 bp Feature: domain Description: HNH Note: nucleases Location: 83013-83151 bp Feature: domain Description: HNH Note: nucleases Location: 8301 3-831 51 bp Feature: gene Location: 83901-85022 bp Feature: domain Description: COG3177 Location: 83919-85011 bp Feature: domain Description: COG31 77 Location: 8391 9-8501 1 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT NTP_transferase_like_1 (cd06422), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNH (pfam01844), LptD (COG1452), PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), PRK05658 (RNA polymerase sigma factor RpoD; Validated), PBP2_BvgS_HisK_like (cd01007)
PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), GIIM (pfam08388), COG3177 (Fic family protein )