myRT

myRT report for GCA_013178495.1_ASM1317849v1

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Seq: JABLTX010000003.1 Pseudomonas aeruginosa strain PASP527 NODE_3_length_289186_cov_22.4615, whole genome shotgun sequence (289186 bp)
Overview 1 RT 1: 194806-205539 bp Neighborhood of RT #1 [194806, 205541] NERD COG3177 RVT_N RVT-GII GIIM HNH PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 PRK05658 Feature: gene Location: 194806-195141 bp Feature: domain Description: NERD Location: 194905-195076 bp Feature: domain Description: NERD Location: 1 94905-1 95076 bp Feature: gene Location: 195234-196355 bp Feature: domain Description: COG3177 Location: 195252-196344 bp Feature: domain Description: COG31 77 Location: 1 95252-1 96344 bp Feature: gene Location: 197078-198763 bp Feature: RT Description: RVT_N Location: 197135-197375 bp Feature: RT Description: RVT_N Location: 1 971 35-1 97375 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 197423-198059 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 97423-1 98059 bp Feature: domain Description: GIIM Note: maturase Location: 198113-198344 bp Feature: domain Description: GIIM Note: maturase Location: 1 981 1 3-1 98344 bp Feature: domain Description: HNH Note: nucleases Location: 198596-198734 bp Feature: domain Description: HNH Note: nucleases Location: 1 98596-1 98734 bp Feature: gene Location: 199844-203581 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 199952-200609 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 1 99952-200609 bp Feature: domain Description: PRK09776 Location: 200822-201293 bp Feature: domain Description: PRK09776 Location: 200822-201 293 bp Feature: domain Description: PAS Location: 201338-201875 bp Feature: domain Description: PAS Location: 201 338-201 875 bp Feature: domain Description: PRK10060 Location: 201884-203531 bp Feature: domain Description: PRK1 0060 Location: 201 884-203531 bp Feature: gene Location: 203688-205541 bp Feature: domain Description: PRK05658 Location: 203700-205539 bp Feature: domain Description: PRK05658 Location: 203700-205539 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT NERD (pfam08378), COG3177 (Fic family protein ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase)
PRK05658 (RNA polymerase sigma factor RpoD; Validated)