myRT

myRT report for GCA_013178575.1_ASM1317857v1

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Seq: JABLUJ010000010.1 Pseudomonas aeruginosa strain PASP315 NODE_10_length_230833_cov_52.7906, whole genome shotgun sequence (230833 bp)
Overview 1 RT 1: 49466-58307 bp 2 RT 2: 74571-85241 bp Neighborhood of RT #1 [49466, 58315] NTP_transferase_like_1 COG3178 RVT_N RVT-GII YkfC HNH LptD PRK10770 Neighborhood of RT #2 [74571, 85306] PRK05658 PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 RVT_N RVT-GII GIIM HNH COG3177 NERD Feature: gene Location: 49466-50140 bp Feature: domain Description: NTP_transferase_like_1 Location: 49472-50111 bp Feature: domain Description: NTP_transferase_like_1 Location: 49472-501 1 1 bp Feature: gene Location: 50137-51153 bp Feature: domain Description: COG3178 Location: 50140-51139 bp Feature: domain Description: COG31 78 Location: 501 40-51 1 39 bp Feature: gene Location: 52426-54138 bp Feature: domain Description: RVT_N Location: 52483-52726 bp Feature: domain Description: RVT_N Location: 52483-52726 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 52771-53407 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 52771 -53407 bp Feature: domain Description: YkfC Location: 53617-53767 bp Feature: domain Description: YkfC Location: 5361 7-53767 bp Feature: domain Description: HNH Note: nucleases Location: 53944-54082 bp Feature: domain Description: HNH Note: nucleases Location: 53944-54082 bp Feature: gene Location: 54271-57042 bp Feature: domain Description: LptD Location: 54466-57028 bp Feature: domain Description: LptD Location: 54466-57028 bp Feature: gene Location: 57101-58315 bp Feature: domain Description: PRK10770 Location: 57113-58307 bp Feature: domain Description: PRK1 0770 Location: 571 1 3-58307 bp Feature: gene Location: 74571-76424 bp Feature: domain Description: PRK05658 Location: 74583-76422 bp Feature: domain Description: PRK05658 Location: 74583-76422 bp Feature: gene Location: 76531-80268 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 76639-77296 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 76639-77296 bp Feature: domain Description: PRK09776 Location: 77509-77980 bp Feature: domain Description: PRK09776 Location: 77509-77980 bp Feature: domain Description: PAS Location: 78037-78562 bp Feature: domain Description: PAS Location: 78037-78562 bp Feature: domain Description: PRK10060 Location: 78574-80218 bp Feature: domain Description: PRK1 0060 Location: 78574-8021 8 bp Feature: gene Location: 81349-83034 bp Feature: domain Description: RVT_N Location: 81406-81646 bp Feature: domain Description: RVT_N Location: 81 406-81 646 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 81694-82330 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 81 694-82330 bp Feature: domain Description: GIIM Note: maturase Location: 82384-82615 bp Feature: domain Description: GIIM Note: maturase Location: 82384-8261 5 bp Feature: domain Description: HNH Note: nucleases Location: 82867-83005 bp Feature: domain Description: HNH Note: nucleases Location: 82867-83005 bp Feature: gene Location: 83757-84878 bp Feature: domain Description: COG3177 Location: 83775-84867 bp Feature: domain Description: COG31 77 Location: 83775-84867 bp Feature: gene Location: 85091-85306 bp Feature: domain Description: NERD Location: 85118-85241 bp Feature: domain Description: NERD Location: 851 1 8-85241 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT NTP_transferase_like_1 (cd06422), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNH (pfam01844), LptD (COG1452), PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), PRK05658 (RNA polymerase sigma factor RpoD; Validated), PBP2_BvgS_HisK_like (cd01007)
PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), GIIM (pfam08388), COG3177 (Fic family protein ), NERD (pfam08378)

Seq: JABLUJ010000033.1 Pseudomonas aeruginosa strain PASP315 NODE_33_length_55853_cov_56.1383, whole genome shotgun sequence (55853 bp)
Overview 1 RT 1: 16518-20897 bp Neighborhood of RT #1 [16518, 20897] ABC_phnC DUF772 RVT-GII GIIM Feature: gene Location: 16518-17345 bp Feature: domain Description: ABC_phnC Location: 16548-17262 bp Feature: domain Description: ABC_phnC Location: 16548-172 62 bp Feature: gene Location: 17688-18329 bp Feature: domain Description: DUF772 Location: 17838-18033 bp Feature: domain Description: DUF772 Location: 17838-18033 bp Feature: gene Location: 18718-19986 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18931-19588 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18931-19588 bp Feature: domain Description: GIIM Note: maturase Location: 19666-19888 bp Feature: domain Description: GIIM Note: maturase Location: 19666-19888 bp Feature: gene Location: 20136-20534 bp Feature: gene Location: 20718-20897 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ABC_phnC (TIGR02315), DUF772 (pfam05598), RVT-GII, GIIM (pfam08388)

Seq: JABLUJ010000041.1 Pseudomonas aeruginosa strain PASP315 NODE_41_length_36084_cov_60.9229, whole genome shotgun sequence (36084 bp)
Overview 1 RT 1: 1825-9136 bp Neighborhood of RT #1 [1825, 10191] AAA_21 AAA_21 RVT-UG5 YeeA DUF262 Feature: gene Location: 1825-2964 bp Feature: domain Description: AAA_21 Location: 1897-1966 bp Feature: domain Description: AAA_21 Location: 1897-1966 bp Feature: domain Description: AAA_21 Location: 2440-2770 bp Feature: domain Description: AAA_21 Location: 2440-2770 bp Feature: gene Location: 2964-3521 bp Feature: gene Location: 3518-6538 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 4013-4484 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 4013 -4484 bp Feature: gene Location: 6535-8316 bp Feature: domain Description: YeeA Location: 7402-8182 bp Feature: domain Description: YeeA Location: 7402-8182 bp Feature: gene Location: 8320-10191 bp Feature: domain Description: DUF262 Location: 8368-9136 bp Feature: domain Description: DUF262 Location: 83 68-913 6 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AAA_21 (pfam13304), RVT-UG5, YeeA (COG1002), DUF262 (pfam03235)