myRT

myRT report for GCA_013178655.1_ASM1317865v1

Download annotations/find similar RTs

Seq: JABLUE010000108.1 Pseudomonas aeruginosa strain PASP450 NODE_108_length_2421_cov_85.3754, whole genome shotgun sequence (2421 bp)
Overview 1 RT 1: 86-2418 bp Neighborhood of RT #1 [86, 2418] RVT_N RVT-GII GIIM HNHc Feature: gene Location: 86-1804 bp Feature: domain Description: RVT_N Location: 143-380 bp Feature: domain Description: RVT_N Location: 1 43-380 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 431-1082 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 431 -1 082 bp Feature: domain Description: GIIM Note: maturase Location: 1136-1367 bp Feature: domain Description: GIIM Note: maturase Location: 1 1 36-1 367 bp Feature: domain Description: HNHc Note: nucleases Location: 1601-1757 bp Feature: domain Description: HNHc Note: nucleases Location: 1 601 -1 757 bp Feature: gene Location: 2074-2202 bp Feature: gene Location: 2233-2418 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: JABLUE010000025.1 Pseudomonas aeruginosa strain PASP450 NODE_25_length_96956_cov_35.9314, whole genome shotgun sequence (96956 bp)
Overview 1 RT 1: 90276-96703 bp Neighborhood of RT #1 [90276, 96807] restrict_AAA_1 restrict_AAA_1 COG4127 RVT-UG5 nitrilase Feature: gene Location: 90276-92027 bp Feature: domain Description: restrict_AAA_1 Location: 90279-91026 bp Feature: domain Description: restrict_AAA_1 Location: 902 79-9102 6 bp Feature: domain Description: restrict_AAA_1 Location: 91353-91740 bp Feature: domain Description: restrict_AAA_1 Location: 91353-91740 bp Feature: gene Location: 92965-93957 bp Feature: domain Description: COG4127 Location: 92971-93946 bp Feature: domain Description: COG412 7 Location: 92 971-93946 bp Feature: gene Location: 94327-96807 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 94330-94759 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 94330-94759 bp Feature: domain Description: nitrilase Location: 96121-96703 bp Feature: domain Description: nitrilase Location: 9612 1-96703 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT restrict_AAA_1 (TIGR04435), COG4127 (Predicted restriction endonuclease, Mrr-cat superfamily ), RVT-UG5, nitrilase (cl11424)