myRT

myRT report for GCA_013178685.1_ASM1317868v1

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Seq: JABLUH010000003.1 Pseudomonas aeruginosa strain PASP388 NODE_3_length_377304_cov_27.3112, whole genome shotgun sequence (377304 bp)
Overview 1 RT 1: 49422-58281 bp 2 RT 2: 74545-84842 bp Neighborhood of RT #1 [49422, 58289] NTP_transferase_like_1 COG3178 RVT_N RVT-GII YkfC HNH LptD PRK10770 Neighborhood of RT #2 [74545, 84853] PRK05658 PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 RVT_N RVT-GII GIIM HNH COG3177 Feature: gene Location: 49422-50096 bp Feature: domain Description: NTP_transferase_like_1 Location: 49428-50067 bp Feature: domain Description: NTP_transferase_like_1 Location: 49428-50067 bp Feature: gene Location: 50093-51109 bp Feature: domain Description: COG3178 Location: 50096-51095 bp Feature: domain Description: COG31 78 Location: 50096-51 095 bp Feature: gene Location: 52382-54094 bp Feature: RT Description: RVT_N Location: 52439-52682 bp Feature: RT Description: RVT_N Location: 52439-52682 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 52727-53363 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 52727-53363 bp Feature: domain Description: YkfC Location: 53570-53723 bp Feature: domain Description: YkfC Location: 53570-53723 bp Feature: domain Description: HNH Note: nucleases Location: 53900-54038 bp Feature: domain Description: HNH Note: nucleases Location: 53900-54038 bp Feature: gene Location: 54227-57016 bp Feature: domain Description: LptD Location: 54422-57002 bp Feature: domain Description: LptD Location: 54422-57002 bp Feature: gene Location: 57075-58289 bp Feature: domain Description: PRK10770 Location: 57087-58281 bp Feature: domain Description: PRK1 0770 Location: 57087-58281 bp Feature: gene Location: 74545-76398 bp Feature: domain Description: PRK05658 Location: 74557-76396 bp Feature: domain Description: PRK05658 Location: 74557-76396 bp Feature: gene Location: 76505-80242 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 76613-77270 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 7661 3-77270 bp Feature: domain Description: PRK09776 Location: 77483-77954 bp Feature: domain Description: PRK09776 Location: 77483-77954 bp Feature: domain Description: PAS Location: 78011-78536 bp Feature: domain Description: PAS Location: 7801 1 -78536 bp Feature: domain Description: PRK10060 Location: 78545-80192 bp Feature: domain Description: PRK1 0060 Location: 78545-801 92 bp Feature: gene Location: 81323-83008 bp Feature: RT Description: RVT_N Location: 81380-81620 bp Feature: RT Description: RVT_N Location: 81 380-81 620 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 81668-82304 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 81 668-82304 bp Feature: domain Description: GIIM Note: maturase Location: 82358-82589 bp Feature: domain Description: GIIM Note: maturase Location: 82358-82589 bp Feature: domain Description: HNH Note: nucleases Location: 82841-82979 bp Feature: domain Description: HNH Note: nucleases Location: 82841 -82979 bp Feature: gene Location: 83336-83473 bp Feature: gene Location: 83732-84853 bp Feature: domain Description: COG3177 Location: 83750-84842 bp Feature: domain Description: COG31 77 Location: 83750-84842 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT NTP_transferase_like_1 (cd06422), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNH (pfam01844), LptD (COG1452), PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), PRK05658 (RNA polymerase sigma factor RpoD; Validated), PBP2_BvgS_HisK_like (cd01007)
PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), GIIM (pfam08388), COG3177 (Fic family protein )

Seq: JABLUH010000084.1 Pseudomonas aeruginosa strain PASP388 NODE_84_length_2415_cov_71.3353, whole genome shotgun sequence (2415 bp)
Overview 1 RT 1: 83-2220 bp Neighborhood of RT #1 [83, 2220] RVT_N RVT-GII GIIM HNHc Feature: gene Location: 83-1792 bp Feature: RT Description: RVT_N Location: 146-389 bp Feature: RT Description: RVT_N Location: 146-389 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 434-1070 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 434-1070 bp Feature: domain Description: GIIM Note: maturase Location: 1124-1355 bp Feature: domain Description: GIIM Note: maturase Location: 112 4-1355 bp Feature: domain Description: HNHc Note: nucleases Location: 1589-1745 bp Feature: domain Description: HNHc Note: nucleases Location: 1589-1745 bp Feature: gene Location: 1879-2220 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)