myRT

myRT report for GCA_013178895.1_ASM1317889v1

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Seq: JABLTV010000011.1 Pseudomonas aeruginosa strain PASP639 NODE_11_length_230975_cov_37.2961, whole genome shotgun sequence (230975 bp)
Overview 1 RT 1: 146055-156361 bp 2 RT 2: 172624-181461 bp Neighborhood of RT #1 [146055, 156363] COG3177 RVT_N RVT-GII GIIM HNH PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 PRK05658 Neighborhood of RT #2 [172624, 181490] PRK10770 LptD RVT_N RVT-GII YkfC HNH COG3178 NTP_transferase_like_1 Feature: gene Location: 146055-147176 bp Feature: domain Description: COG3177 Location: 146073-147165 bp Feature: domain Description: COG31 77 Location: 1 46073-1 471 65 bp Feature: gene Location: 147435-147572 bp Feature: gene Location: 147900-149585 bp Feature: domain Description: RVT_N Location: 147957-148197 bp Feature: domain Description: RVT_N Location: 1 47957-1 481 97 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 148245-148881 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 48245-1 48881 bp Feature: domain Description: GIIM Note: maturase Location: 148935-149166 bp Feature: domain Description: GIIM Note: maturase Location: 1 48935-1 491 66 bp Feature: domain Description: HNH Note: nucleases Location: 149418-149556 bp Feature: domain Description: HNH Note: nucleases Location: 1 4941 8-1 49556 bp Feature: gene Location: 150666-154403 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 150774-151431 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 1 50774-1 51 431 bp Feature: domain Description: PRK09776 Location: 151644-152115 bp Feature: domain Description: PRK09776 Location: 1 51 644-1 521 1 5 bp Feature: domain Description: PAS Location: 152205-152697 bp Feature: domain Description: PAS Location: 1 52205-1 52697 bp Feature: domain Description: PRK10060 Location: 152706-154353 bp Feature: domain Description: PRK1 0060 Location: 1 52706-1 54353 bp Feature: gene Location: 154510-156363 bp Feature: domain Description: PRK05658 Location: 154522-156361 bp Feature: domain Description: PRK05658 Location: 1 54522-1 56361 bp Feature: gene Location: 172624-173838 bp Feature: domain Description: PRK10770 Location: 172636-173830 bp Feature: domain Description: PRK1 0770 Location: 1 72636-1 73830 bp Feature: gene Location: 173897-176686 bp Feature: domain Description: LptD Location: 174092-176672 bp Feature: domain Description: LptD Location: 1 74092-1 76672 bp Feature: gene Location: 176819-178531 bp Feature: domain Description: RVT_N Location: 176876-177119 bp Feature: domain Description: RVT_N Location: 1 76876-1 771 1 9 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 177164-177800 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 771 64-1 77800 bp Feature: domain Description: YkfC Location: 178010-178160 bp Feature: domain Description: YkfC Location: 1 7801 0-1 781 60 bp Feature: domain Description: HNH Note: nucleases Location: 178337-178475 bp Feature: domain Description: HNH Note: nucleases Location: 1 78337-1 78475 bp Feature: gene Location: 179803-180819 bp Feature: domain Description: COG3178 Location: 179806-180805 bp Feature: domain Description: COG31 78 Location: 1 79806-1 80805 bp Feature: gene Location: 180816-181490 bp Feature: domain Description: NTP_transferase_like_1 Location: 180822-181461 bp Feature: domain Description: NTP_transferase_like_1 Location: 1 80822-1 81 461 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3177 (Fic family protein ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), PRK05658 (RNA polymerase sigma factor RpoD; Validated)
PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), LptD (COG1452), YkfC (COG3344), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), NTP_transferase_like_1 (cd06422)

Seq: JABLTV010000014.1 Pseudomonas aeruginosa strain PASP639 NODE_14_length_203663_cov_36.6657, whole genome shotgun sequence (203663 bp)
Overview 1 RT 1: 159268-163343 bp Neighborhood of RT #1 [159268, 163343] DUF3085 RVT-GII GIIM Feature: gene Location: 159268-159633 bp Feature: domain Description: DUF3085 Location: 159334-159604 bp Feature: domain Description: DUF3085 Location: 159334-159604 bp Feature: gene Location: 159699-160496 bp Feature: gene Location: 160836-162035 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 161001-161616 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 161001-161616 bp Feature: domain Description: GIIM Note: maturase Location: 161673-161889 bp Feature: domain Description: GIIM Note: maturase Location: 161673-161889 bp Feature: gene Location: 161628-162272 bp Feature: gene Location: 162627-163343 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF3085 (pfam11284), RVT-GII, GIIM (pfam08388)

Seq: JABLTV010000018.1 Pseudomonas aeruginosa strain PASP639 NODE_18_length_120264_cov_47.53, whole genome shotgun sequence (120264 bp)
Overview 1 RT 1: 80927-85306 bp Neighborhood of RT #1 [80927, 85306] ABC_phnC DUF772 RVT-GII GIIM Feature: gene Location: 80927-81754 bp Feature: domain Description: ABC_phnC Location: 80957-81671 bp Feature: domain Description: ABC_phnC Location: 80957-81671 bp Feature: gene Location: 82097-82738 bp Feature: domain Description: DUF772 Location: 82247-82442 bp Feature: domain Description: DUF772 Location: 82247-82442 bp Feature: gene Location: 83127-84395 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 83340-83997 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 83 3 40-83 997 bp Feature: domain Description: GIIM Note: maturase Location: 84075-84297 bp Feature: domain Description: GIIM Note: maturase Location: 84075-84297 bp Feature: gene Location: 84545-84943 bp Feature: gene Location: 85127-85306 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ABC_phnC (TIGR02315), DUF772 (pfam05598), RVT-GII, GIIM (pfam08388)

Seq: JABLTV010000026.1 Pseudomonas aeruginosa strain PASP639 NODE_26_length_84780_cov_36.7046, whole genome shotgun sequence (84780 bp)
Overview 1 RT 1: 47512-49664 bp Neighborhood of RT #1 [47512, 50197] HipB RVT-UG17 Feature: gene Location: 47512-47793 bp Feature: domain Description: HipB Location: 47533-47767 bp Feature: domain Description: HipB Location: 4 7533-4 7767 bp Feature: gene Location: 47879-48304 bp Feature: gene Location: 48833-50197 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 49061-49664 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 4 9061-4 9664 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HipB (COG1396), RVT-UG17