myRT

myRT report for GCA_013183465.1_ASM1318346v1

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Seq: SNPR01000039.1 Escherichia coli strain FH58 contig00039, whole genome shotgun sequence (47403 bp)
Overview 1 RT 1: 30977-35519 bp Neighborhood of RT #1 [30977, 35542] RVT-Retrons PBP2_CrgA_like_5 XdhC Feature: gene Location: 30977-31171 bp Feature: gene Location: 31454-32422 bp Feature: gene Location: 32409-33341 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 32511-33102 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3251 1 -331 02 bp Feature: gene Location: 34197-34607 bp Feature: domain Description: PBP2_CrgA_like_5 Location: 34269-34581 bp Feature: domain Description: PBP2_CrgA_like_5 Location: 34269-34581 bp Feature: gene Location: 34586-35542 bp Feature: domain Description: XdhC Location: 34664-35519 bp Feature: domain Description: XdhC Location: 34664-3551 9 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, PBP2_CrgA_like_5 (cd08474), XdhC (COG1975)

Seq: SNPR01000052.1 Escherichia coli strain FH58 contig00052, whole genome shotgun sequence (31085 bp)
Overview 1 RT 1: 15000-17400 bp Neighborhood of RT #1 [15000, 17417] YkfC RVT-GII GIIM DEDD_Tnp_IS110 Feature: gene Location: 15000-15206 bp Feature: gene Location: 15327-15581 bp Feature: domain Description: YkfC Location: 15336-15549 bp Feature: domain Description: YkfC Location: 15336-15549 bp Feature: gene Location: 15607-16719 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15610-16264 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15610-162 64 bp Feature: domain Description: GIIM Note: maturase Location: 16339-16537 bp Feature: domain Description: GIIM Note: maturase Location: 16339-16537 bp Feature: gene Location: 16921-17088 bp Feature: gene Location: 17157-17417 bp Feature: domain Description: DEDD_Tnp_IS110 Location: 17196-17400 bp Feature: domain Description: DEDD_Tnp_IS110 Location: 17196-17400 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YkfC (COG3344), RVT-GII, GIIM (pfam08388), DEDD_Tnp_IS110 (pfam01548)

Seq: SNPR01000088.1 Escherichia coli strain FH58 contig00088, whole genome shotgun sequence (13775 bp)
Overview 1 RT 1: 555-5409 bp Neighborhood of RT #1 [555, 5414] DUF1380 RVT-GII Intron_maturas2 HNHc PRK13732 DUF905 Feature: gene Location: 555-977 bp Feature: domain Description: DUF1380 Location: 558-852 bp Feature: domain Description: DUF13 80 Location: 558-852 bp Feature: gene Location: 1356-2024 bp Feature: gene Location: 2587-4488 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2854-3685 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2854-3 685 bp Feature: domain Description: Intron_maturas2 Location: 3799-4057 bp Feature: domain Description: Intron_maturas2 Location: 3 799-4057 bp Feature: domain Description: HNHc Note: nucleases Location: 4231-4393 bp Feature: domain Description: HNHc Note: nucleases Location: 423 1-43 93 bp Feature: gene Location: 4683-5123 bp Feature: domain Description: PRK13732 Location: 4689-5121 bp Feature: domain Description: PRK13 73 2 Location: 4689-5121 bp Feature: gene Location: 5181-5414 bp Feature: domain Description: DUF905 Location: 5211-5409 bp Feature: domain Description: DUF905 Location: 5211-5409 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), PRK13732 (single-stranded DNA-binding protein; Provisional), DUF905 (pfam06006), DUF1380 (pfam07128)

Seq: SNPR01000124.1 Escherichia coli strain FH58 contig00124, whole genome shotgun sequence (5062 bp)
Overview 1 RT 1: 2-4541 bp Neighborhood of RT #1 [2, 4541] DUF3560 AdoMet_MTases RVT_N RVT-GII GIIM HNHc Feature: gene Location: 2-976 bp Feature: domain Description: DUF3560 Location: 5-239 bp Feature: domain Description: DUF3560 Location: 5-239 bp Feature: gene Location: 1025-1588 bp Feature: domain Description: AdoMet_MTases Location: 1187-1487 bp Feature: domain Description: AdoMet_MTases Location: 1187-14 87 bp Feature: gene Location: 1966-3633 bp Feature: RT Description: RVT_N Location: 2014-2251 bp Feature: RT Description: RVT_N Location: 2014 -2251 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2302-2944 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2302-294 4 bp Feature: domain Description: GIIM Note: maturase Location: 2995-3229 bp Feature: domain Description: GIIM Note: maturase Location: 2995-3229 bp Feature: domain Description: HNHc Note: nucleases Location: 3439-3598 bp Feature: domain Description: HNHc Note: nucleases Location: 34 39-3598 bp Feature: gene Location: 3837-4019 bp Feature: gene Location: 4131-4541 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AdoMet_MTases (cl17173), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), DUF3560 (pfam12083)