myRT

myRT report for GCA_013184835.1_ASM1318483v1

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Seq: JAAVJU010000011.1 Streptococcus suis strain HNAY30 NODE_11_length_64692_cov_202.516, whole genome shotgun sequence (64692 bp)
Overview 1 RT 1: 33394-37073 bp Neighborhood of RT #1 [33394, 37075] Aldose_epim_lacX RVT-Retrons RelB_DinJ rpmG Feature: gene Location: 33394-33786 bp Feature: domain Description: Aldose_epim_lacX Location: 33403-33769 bp Feature: domain Description: Aldose_epim_lacX Location: 33403-33769 bp Feature: gene Location: 33832-34770 bp Feature: gene Location: 34808-35548 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 34814-35216 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3481 4-3521 6 bp Feature: gene Location: 36000-36740 bp Feature: domain Description: RelB_DinJ Location: 36009-36177 bp Feature: domain Description: RelB_DinJ Location: 36009-361 77 bp Feature: gene Location: 36926-37075 bp Feature: domain Description: rpmG Location: 36929-37073 bp Feature: domain Description: rpmG Location: 36929-37073 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Aldose_epim_lacX (cd09024), RVT-Retrons, RelB_DinJ (TIGR02384), rpmG (PRK00595)

Seq: JAAVJU010000013.1 Streptococcus suis strain HNAY30 NODE_13_length_63440_cov_181.08, whole genome shotgun sequence (63440 bp)
Overview 1 RT 1: 43867-53166 bp Neighborhood of RT #1 [43867, 53166] TnpV SF2_C_SNF RVT-GII Intron_maturas2 HNHc N6_Mtase COG4646 Feature: gene Location: 43867-44241 bp Feature: domain Description: TnpV Location: 43903-44233 bp Feature: domain Description: TnpV Location: 43903-442 33 bp Feature: gene Location: 44222-44689 bp Feature: domain Description: SF2_C_SNF Location: 44465-44612 bp Feature: domain Description: SF2 _C_SNF Location: 44465-44612 bp Feature: gene Location: 44827-46614 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 45097-45889 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 45097-45889 bp Feature: domain Description: Intron_maturas2 Location: 45994-46225 bp Feature: domain Description: Intron_maturas2 Location: 45994-462 2 5 bp Feature: domain Description: HNHc Note: nucleases Location: 46390-46576 bp Feature: domain Description: HNHc Note: nucleases Location: 46390-46576 bp Feature: gene Location: 47103-52436 bp Feature: domain Description: N6_Mtase Location: 48999-49578 bp Feature: domain Description: N6_Mtase Location: 48999-49578 bp Feature: domain Description: COG4646 Location: 50172-52278 bp Feature: domain Description: COG4646 Location: 50172 -52 2 78 bp Feature: gene Location: 52615-53166 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TnpV (pfam14198), SF2_C_SNF (cd18793), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), N6_Mtase (pfam02384), COG4646 (Adenine-specific DNA methylase, N12 class )

Seq: JAAVJU010000015.1 Streptococcus suis strain HNAY30 NODE_15_length_62614_cov_185.03, whole genome shotgun sequence (62614 bp)
Overview 1 RT 1: 14817-20890 bp Neighborhood of RT #1 [14817, 20910] NTP-PPase_u6 thrS RVT-Retrons HisM HisM Feature: gene Location: 14817-15026 bp Feature: domain Description: NTP-PPase_u6 Location: 14823-14997 bp Feature: domain Description: NTP-PPase_u6 Location: 14823 -14997 bp Feature: gene Location: 15182-17131 bp Feature: domain Description: thrS Location: 15185-17111 bp Feature: domain Description: thrS Location: 15185-17111 bp Feature: gene Location: 17358-19340 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 17481-18207 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 17481-18207 bp Feature: gene Location: 19538-20197 bp Feature: domain Description: HisM Location: 19571-20183 bp Feature: domain Description: HisM Location: 19571-20183 bp Feature: gene Location: 20212-20910 bp Feature: domain Description: HisM Location: 20260-20890 bp Feature: domain Description: HisM Location: 20260-20890 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT NTP-PPase_u6 (cd11543), thrS (TIGR00418), RVT-Retrons, HisM (COG0765)