myRT

myRT report for GCA_013186615.1_ASM1318661v1

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Seq: JABMIS010000082.1 Escherichia coli strain MCE14 NODE_10_length_180150_cov_40.3057, whole genome shotgun sequence (180150 bp)
Overview 1 RT 1: 160995-165833 bp 2 RT 2: 172837-176726 bp Neighborhood of RT #1 [160995, 165844] Tra8 PHA02517 RVT-GII GIIM PHA02517 COG3440 Neighborhood of RT #2 [172837, 176731] RVT-GII RVT-GII GIIM LacI PBP1_GntR Feature: gene Location: 160995-161789 bp Feature: domain Description: Tra8 Location: 161010-161778 bp Feature: domain Description: Tra8 Location: 1 61 01 0-1 61 778 bp Feature: gene Location: 161865-162290 bp Feature: domain Description: PHA02517 Location: 161889-162225 bp Feature: domain Description: PHA0251 7 Location: 1 61 889-1 62225 bp Feature: gene Location: 162882-164405 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 163155-163887 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 631 55-1 63887 bp Feature: domain Description: GIIM Note: maturase Location: 163962-164160 bp Feature: domain Description: GIIM Note: maturase Location: 1 63962-1 641 60 bp Feature: gene Location: 164570-164974 bp Feature: domain Description: PHA02517 Location: 164573-164963 bp Feature: domain Description: PHA0251 7 Location: 1 64573-1 64963 bp Feature: gene Location: 165008-165844 bp Feature: domain Description: COG3440 Location: 165020-165833 bp Feature: domain Description: COG3440 Location: 1 65020-1 65833 bp Feature: gene Location: 172837-173190 bp Feature: gene Location: 173549-173746 bp Feature: gene Location: 173915-174349 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 174107-174323 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 741 07-1 74323 bp Feature: gene Location: 174322-175173 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 174325-174733 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 74325-1 74733 bp Feature: domain Description: GIIM Note: maturase Location: 174781-175006 bp Feature: domain Description: GIIM Note: maturase Location: 1 74781 -1 75006 bp Feature: gene Location: 175351-175569 bp Feature: gene Location: 175700-176731 bp Feature: domain Description: LacI Location: 175742-175877 bp Feature: domain Description: LacI Location: 1 75742-1 75877 bp Feature: domain Description: PBP1_GntR Location: 175916-176726 bp Feature: domain Description: PBP1 _GntR Location: 1 7591 6-1 76726 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Tra8 (COG2826), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), COG3440 (Predicted restriction endonuclease ), LacI (pfam00356), PBP1_GntR (cd01575)

Seq: JABMIS010000091.1 Escherichia coli strain MCE14 NODE_1_length_923408_cov_36.5161, whole genome shotgun sequence (923408 bp)
Overview 1 RT 1: 593996-597748 bp Neighborhood of RT #1 [593996, 597957] DinI RVT-Retrons COG3950 TIGR02646 Feature: gene Location: 593996-594229 bp Feature: domain Description: DinI Location: 594038-594224 bp Feature: domain Description: DinI Location: 594038-5942 2 4 bp Feature: gene Location: 594398-594532 bp Feature: gene Location: 594708-595643 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 594810-595404 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 594810-595404 bp Feature: gene Location: 595643-597277 bp Feature: domain Description: COG3950 Location: 595781-597239 bp Feature: domain Description: COG3950 Location: 595781-5972 39 bp Feature: gene Location: 597397-597957 bp Feature: domain Description: TIGR02646 Location: 597400-597748 bp Feature: domain Description: TIGR02 646 Location: 597400-597748 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DinI (pfam06183), RVT-Retrons, COG3950 (Predicted ATP-binding protein involved in virulence ), TIGR02646 (TIGR02646 family protein)

Seq: JABMIS010000069.1 Escherichia coli strain MCE14 NODE_23_length_37465_cov_37.2629, whole genome shotgun sequence (37465 bp)
Overview 1 RT 1: 20000-24283 bp Neighborhood of RT #1 [20000, 24291] RVT-GII RVT-GII GIIM YesM Feature: gene Location: 20000-20905 bp Feature: gene Location: 21163-21360 bp Feature: gene Location: 21391-21930 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21721-21799 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21721-21799 bp Feature: gene Location: 21958-22479 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21964-22246 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21964-22246 bp Feature: domain Description: GIIM Note: maturase Location: 22294-22474 bp Feature: domain Description: GIIM Note: maturase Location: 22294-22474 bp Feature: gene Location: 22801-22989 bp Feature: gene Location: 23029-24291 bp Feature: domain Description: YesM Location: 23542-24283 bp Feature: domain Description: YesM Location: 23 542-24283 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), YesM (COG2972)