myRT

myRT report for GCA_013187405.1_ASM1318740v1

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Seq: JABMLY010000023.1 Escherichia coli strain L29 scaffold47, whole genome shotgun sequence (218087 bp)
Overview 1 RT 1: 88882-94290 bp 2 RT 2: 111762-118000 bp Neighborhood of RT #1 [88882, 94361] IS285 PHA02517 RVT-GII GIIM PHA02517 T5orf172 Neighborhood of RT #2 [111762, 118137] RVT-UG5 nitrilase AbiEi_3_N AbiEi_3 AbiEii Feature: gene Location: 88882-89010 bp Feature: domain Description: IS285 Location: 88888-88999 bp Feature: domain Description: IS285 Location: 88888-88999 bp Feature: gene Location: 89797-90276 bp Feature: domain Description: PHA02517 Location: 89857-90211 bp Feature: domain Description: PHA0251 7 Location: 89857-9021 1 bp Feature: gene Location: 90868-92391 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 91141-91873 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 91 1 41 -91 873 bp Feature: domain Description: GIIM Note: maturase Location: 91948-92146 bp Feature: domain Description: GIIM Note: maturase Location: 91 948-921 46 bp Feature: gene Location: 92717-92857 bp Feature: domain Description: PHA02517 Location: 92720-92840 bp Feature: domain Description: PHA0251 7 Location: 92720-92840 bp Feature: gene Location: 93183-94361 bp Feature: domain Description: T5orf172 Location: 94026-94290 bp Feature: domain Description: T5orf1 72 Location: 94026-94290 bp Feature: gene Location: 111762-111965 bp Feature: gene Location: 112106-112576 bp Feature: gene Location: 112923-116132 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 113451-113940 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 1 1 3451 -1 1 3940 bp Feature: domain Description: nitrilase Location: 115446-116043 bp Feature: domain Description: nitrilase Location: 1 1 5446-1 1 6043 bp Feature: gene Location: 116427-117230 bp Feature: domain Description: AbiEi_3_N Location: 116460-116721 bp Feature: domain Description: AbiEi_3_N Location: 1 1 6460-1 1 6721 bp Feature: domain Description: AbiEi_3 Location: 116736-117189 bp Feature: domain Description: AbiEi_3 Location: 1 1 6736-1 1 71 89 bp Feature: gene Location: 117217-118137 bp Feature: domain Description: AbiEii Location: 117259-118000 bp Feature: domain Description: AbiEii Location: 1 1 7259-1 1 8000 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT IS285 (COG3328), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), T5orf172 (smart00974), RVT-UG5, nitrilase (cl11424), AbiEi_3_N (pfam17194), AbiEi_3 (pfam11459), AbiEii (pfam08843)