myRT

myRT report for GCA_013203545.1_ASM1320354v1

Download annotations/find similar RTs

Seq: JABMQA010000351.1 Bacteroidetes bacterium isolate bin.444 k141_1863186, whole genome shotgun sequence (3198 bp)
Overview 1 RT 1: 1-2433 bp Neighborhood of RT #1 [1, 2433] FIDO RVT-GII GIIM RVT-GII Feature: gene Location: 1-309 bp Feature: domain Description: FIDO Location: 10-301 bp Feature: domain Description: FIDO Location: 1 0-301 bp Feature: gene Location: 466-1491 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 475-997 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 475-997 bp Feature: domain Description: GIIM Note: maturase Location: 1069-1282 bp Feature: domain Description: GIIM Note: maturase Location: 1 069-1 282 bp Feature: gene Location: 1498-1776 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1699-1771 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 699-1 771 bp Feature: gene Location: 1835-2050 bp Feature: gene Location: 2164-2433 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT FIDO (COG2184), RVT-GII, GIIM (pfam08388)

Seq: JABMQA010000434.1 Bacteroidetes bacterium isolate bin.444 k141_2251010, whole genome shotgun sequence (3017 bp)
Overview 1 RT 1: 318-3014 bp Neighborhood of RT #1 [318, 3014] xerC xerC RVT-GII Feature: gene Location: 318-647 bp Feature: gene Location: 640-1503 bp Feature: domain Description: xerC Location: 907-1315 bp Feature: domain Description: xerC Location: 907-1315 bp Feature: domain Description: xerC Location: 1330-1465 bp Feature: domain Description: xerC Location: 1330-1465 bp Feature: gene Location: 1770-2258 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1821-2013 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 182 1-2 013 bp Feature: gene Location: 2309-2455 bp Feature: gene Location: 2808-3014 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, xerC (PRK01287)

Seq: JABMQA010000563.1 Bacteroidetes bacterium isolate bin.444 k141_2922650, whole genome shotgun sequence (11142 bp)
Overview 1 RT 1: 4993-9842 bp Neighborhood of RT #1 [4993, 9842] TPP_E1_PDC_ADC_BCADC AcoB RVT-DGRs Feature: gene Location: 4993-7419 bp Feature: domain Description: TPP_E1_PDC_ADC_BCADC Location: 5068-6055 bp Feature: domain Description: TPP_E1_PDC_ADC_BCADC Location: 5068-6055 bp Feature: domain Description: AcoB Location: 6430-7384 bp Feature: domain Description: AcoB Location: 643 0-73 84 bp Feature: gene Location: 7722-7913 bp Feature: gene Location: 8090-9367 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 8309-9017 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 83 09-9017 bp Feature: gene Location: 9415-9597 bp Feature: gene Location: 9705-9842 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TPP_E1_PDC_ADC_BCADC (cd02000), AcoB (COG0022), RVT-DGRs

Seq: JABMQA010000611.1 Bacteroidetes bacterium isolate bin.444 k141_3094143, whole genome shotgun sequence (4717 bp)
Overview 1 RT 1: 225-4360 bp Neighborhood of RT #1 [225, 4458] TIGR00238 RVT-GII GIIM Feature: gene Location: 225-2423 bp Feature: domain Description: TIGR00238 Location: 882-1956 bp Feature: domain Description: TIGR00238 Location: 882-1956 bp Feature: gene Location: 2766-2990 bp Feature: gene Location: 3067-4458 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3424-4069 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 34 24 -4 069 bp Feature: domain Description: GIIM Note: maturase Location: 4147-4360 bp Feature: domain Description: GIIM Note: maturase Location: 4 14 7-4 360 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TIGR00238 (KamA family protein), RVT-GII, GIIM (pfam08388)

Seq: JABMQA010001147.1 Bacteroidetes bacterium isolate bin.444 k141_5825587, whole genome shotgun sequence (2410 bp)
Overview 1 RT 1: 3-2337 bp Neighborhood of RT #1 [3, 2337] Glycos_transf_2 RVT-DGRs Feature: gene Location: 3-542 bp Feature: domain Description: Glycos_transf_2 Location: 63-423 bp Feature: domain Description: Glycos_transf_2 Location: 63-423 bp Feature: gene Location: 642-1919 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 870-1569 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 870-15 69 bp Feature: gene Location: 1994-2170 bp Feature: gene Location: 2185-2337 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Glycos_transf_2 (pfam00535), RVT-DGRs

Seq: JABMQA010001158.1 Bacteroidetes bacterium isolate bin.444 k141_5873249, whole genome shotgun sequence (6814 bp)
Overview 1 RT 1: 2584-6613 bp Neighborhood of RT #1 [2584, 6813] TIR_2 LRR_4 LRR_4 RocCOR COR TIR_2 RVT-DGRs Feature: gene Location: 2584-3276 bp Feature: domain Description: TIR_2 Location: 2668-3025 bp Feature: domain Description: TIR_2 Location: 26 6 8-3025 bp Feature: gene Location: 3283-5994 bp Feature: domain Description: LRR_4 Location: 3694-3808 bp Feature: domain Description: LRR_4 Location: 36 94-3808 bp Feature: domain Description: LRR_4 Location: 3826-3949 bp Feature: domain Description: LRR_4 Location: 3826 -3949 bp Feature: domain Description: RocCOR Location: 4096-4564 bp Feature: domain Description: RocCOR Location: 4096 -456 4 bp Feature: domain Description: COR Location: 4618-5200 bp Feature: domain Description: COR Location: 46 18-5200 bp Feature: domain Description: TIR_2 Location: 5551-5845 bp Feature: domain Description: TIR_2 Location: 5551-5845 bp Feature: gene Location: 6151-6813 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 6154-6613 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 6 154-6 6 13 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TIR_2 (pfam13676), LRR_4 (pfam12799), RocCOR (cd09914), COR (pfam16095), RVT-DGRs

Seq: JABMQA010001253.1 Bacteroidetes bacterium isolate bin.444 k141_6343300, whole genome shotgun sequence (9668 bp)
Overview 1 RT 1: 3-1694 bp Neighborhood of RT #1 [3, 1694] RVT-DGRs Feature: gene Location: 3-1136 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 222-921 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 222-921 bp Feature: gene Location: 1239-1469 bp Feature: gene Location: 1566-1694 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs