myRT

myRT report for GCA_013203845.1_ASM1320384v1

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Seq: JABMPE010000274.1 Rhodopirellula sp. isolate bin.212 k141_2727748, whole genome shotgun sequence (48910 bp)
Overview 1 RT 1: 114-2112 bp Neighborhood of RT #1 [114, 2112] RVT-GII GIIM Feature: gene Location: 114-1184 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 144-738 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 44-738 bp Feature: domain Description: GIIM Note: maturase Location: 792-1008 bp Feature: domain Description: GIIM Note: maturase Location: 792-1 008 bp Feature: gene Location: 1269-1640 bp Feature: gene Location: 1633-2112 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: JABMPE010000366.1 Rhodopirellula sp. isolate bin.212 k141_3476533, whole genome shotgun sequence (7523 bp)
Overview 1 RT 1: 2-1292 bp Neighborhood of RT #1 [2, 1292] RVT-GII Feature: gene Location: 2-151 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11-146 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11-146 bp Feature: gene Location: 633-953 bp Feature: gene Location: 1029-1292 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: JABMPE010000367.1 Rhodopirellula sp. isolate bin.212 k141_3487885, whole genome shotgun sequence (3809 bp)
Overview 1 RT 1: 1579-3758 bp Neighborhood of RT #1 [1579, 3808] RVT-CRISPR-like GIIM RVT-GII Feature: gene Location: 1579-2631 bp Feature: gene Location: 2713-2925 bp Feature: gene Location: 2931-3461 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 2934-3099 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 293 4-3 099 bp Feature: domain Description: GIIM Note: maturase Location: 3144-3342 bp Feature: domain Description: GIIM Note: maturase Location: 3 144-3 3 42 bp Feature: gene Location: 3434-3808 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3443-3758 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 443 -3 758 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-CRISPR, GIIM (pfam08388), RVT-GII

Seq: JABMPE010000532.1 Rhodopirellula sp. isolate bin.212 k141_4941985, whole genome shotgun sequence (30630 bp)
Overview 1 RT 1: 21315-28815 bp Neighborhood of RT #1 [21315, 29468] Tad RVT-Retrons SGSH DUF3604 DUF3604 Feature: gene Location: 21315-22148 bp Feature: gene Location: 22218-23516 bp Feature: domain Description: Tad Location: 22377-22515 bp Feature: domain Description: Tad Location: 22377-22515 bp Feature: gene Location: 23723-25075 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 24197-24842 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 24 197-24 84 2 bp Feature: gene Location: 25348-26964 bp Feature: domain Description: SGSH Location: 25426-26800 bp Feature: domain Description: SGSH Location: 254 26-26800 bp Feature: gene Location: 27204-29468 bp Feature: domain Description: DUF3604 Location: 28191-28350 bp Feature: domain Description: DUF3604 Location: 28191-28350 bp Feature: domain Description: DUF3604 Location: 28686-28815 bp Feature: domain Description: DUF3604 Location: 28686-28815 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Tad (pfam13400), RVT-Retrons, SGSH (cd16027), DUF3604 (pfam12228)

Seq: JABMPE010000572.1 Rhodopirellula sp. isolate bin.212 k141_5370525, whole genome shotgun sequence (12275 bp)
Overview 1 RT 1: 1772-6336 bp Neighborhood of RT #1 [1772, 6336] RVT-CRISPR-like Feature: gene Location: 1772-1984 bp Feature: gene Location: 2172-2342 bp Feature: gene Location: 2375-4285 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 2765-3278 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 2765 -3278 bp Feature: gene Location: 4343-4816 bp Feature: gene Location: 4855-6336 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-CRISPR

Seq: JABMPE010000648.1 Rhodopirellula sp. isolate bin.212 k141_6252515, whole genome shotgun sequence (28688 bp)
Overview 1 RT 1: 8234-13432 bp Neighborhood of RT #1 [8234, 13521] Tm-1-like PEP_hydrolase RVT-Retrons LRR_RI KOG3864 RaiA Feature: gene Location: 8234-9508 bp Feature: domain Description: Tm-1-like Location: 8297-9497 bp Feature: domain Description: Tm-1-like Location: 8297-9497 bp Feature: gene Location: 9520-10383 bp Feature: domain Description: PEP_hydrolase Location: 9571-10369 bp Feature: domain Description: PEP_hydrolase Location: 9571-1036 9 bp Feature: gene Location: 10618-11628 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 10885-11452 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 10885-11452 bp Feature: gene Location: 11691-12977 bp Feature: domain Description: LRR_RI Location: 12069-12558 bp Feature: domain Description: LRR_RI Location: 1206 9-12558 bp Feature: domain Description: KOG3864 Location: 12687-12966 bp Feature: domain Description: KOG386 4 Location: 126 87-1296 6 bp Feature: gene Location: 13147-13521 bp Feature: domain Description: RaiA Location: 13192-13432 bp Feature: domain Description: RaiA Location: 13192-13432 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Tm-1-like (cl02262), PEP_hydrolase (pfam09370), RVT-Retrons, LRR_RI (smart00368), KOG3864 (KOG3864, Uncharacterized conserved protein ), RaiA (COG1544)

Seq: JABMPE010000711.1 Rhodopirellula sp. isolate bin.212 k141_6855985, whole genome shotgun sequence (22908 bp)
Overview 1 RT 1: 1-6929 bp 2 RT 2: 16497-19650 bp Neighborhood of RT #1 [1, 7021] SIR2_2 COG5635 YfmG RVT-DGRs HRDC YfmG Neighborhood of RT #2 [16497, 19661] Hrd RVT-DGRs BfiI_C_EcoRII_N_B3 YfmG Feature: gene Location: 1-3252 bp Feature: domain Description: SIR2_2 Location: 391-703 bp Feature: domain Description: SIR2_2 Location: 391-7 03 bp Feature: domain Description: COG5635 Location: 1138-2389 bp Feature: domain Description: COG5635 Location: 1138-2389 bp Feature: domain Description: YfmG Location: 2707-3253 bp Feature: domain Description: YfmG Location: 27 07 -3253 bp Feature: gene Location: 3697-4707 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 3907-4492 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 3907 -4492 bp Feature: gene Location: 4704-5213 bp Feature: domain Description: HRDC Location: 4947-5145 bp Feature: domain Description: HRDC Location: 4947 -5145 bp Feature: gene Location: 5354-7021 bp Feature: domain Description: YfmG Location: 6149-6929 bp Feature: domain Description: YfmG Location: 6149-6929 bp Feature: gene Location: 16497-17009 bp Feature: domain Description: Hrd Location: 16746-16944 bp Feature: domain Description: Hrd Location: 167 46-16944 bp Feature: gene Location: 17015-17440 bp Feature: gene Location: 17006-18019 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 17213-17807 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 17 213-17 807 bp Feature: gene Location: 18029-18280 bp Feature: gene Location: 18357-19661 bp Feature: domain Description: BfiI_C_EcoRII_N_B3 Location: 18366-18651 bp Feature: domain Description: BfiI_C_EcoRII_N_B3 Location: 18366-18651 bp Feature: domain Description: YfmG Location: 18912-19650 bp Feature: domain Description: YfmG Location: 18912-19650 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SIR2_2 (pfam13289), COG5635 (Predicted NTPase, NACHT family domain ), YfmG (COG1262), RVT-DGRs, HRDC (smart00341), Hrd (LOAD_Hrd), BfiI_C_EcoRII_N_B3 (cl15242)