myRT

myRT report for GCA_013213925.1_ASM1321392v1

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Seq: JABSRO010000120.1 Pseudoalteromonas sp. isolate DT_88 DT-Pseudoalteromonas-1_scaffold_120, whole genome shotgun sequence (16528 bp)
Overview 1 RT 1: 1-6526 bp Neighborhood of RT #1 [1, 7233] YceH RVT-Retrons DEXQc_UvrD YbjD YbjD Feature: gene Location: 1-312 bp Feature: domain Description: YceH Location: 10-313 bp Feature: domain Description: YceH Location: 1 0-31 3 bp Feature: gene Location: 911-2764 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1046-1763 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 046-1 763 bp Feature: gene Location: 2850-5009 bp Feature: domain Description: DEXQc_UvrD Location: 2913-3768 bp Feature: domain Description: DEXQc_UvrD Location: 291 3-3768 bp Feature: gene Location: 5080-7233 bp Feature: domain Description: YbjD Location: 5083-5752 bp Feature: domain Description: YbjD Location: 5083-5752 bp Feature: domain Description: YbjD Location: 5905-6526 bp Feature: domain Description: YbjD Location: 5905-6526 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YceH (COG3132), RVT-Retrons, DEXQc_UvrD (cd17932), YbjD (COG3593)

Seq: JABSRO010000250.1 Pseudoalteromonas sp. isolate DT_88 DT-Pseudoalteromonas-1_scaffold_250, whole genome shotgun sequence (5380 bp)
Overview 1 RT 1: 2-5371 bp Neighborhood of RT #1 [2, 5379] PulG YjbM RVT-UG12 AAA COG2932 Feature: gene Location: 2-478 bp Feature: domain Description: PulG Location: 5-386 bp Feature: domain Description: PulG Location: 5-386 bp Feature: gene Location: 934-2427 bp Feature: domain Description: YjbM Location: 1129-1762 bp Feature: domain Description: YjbM Location: 112 9-1762 bp Feature: gene Location: 2579-4147 bp Feature: RT Description: RVT-UG12 Note: UG12 RT Location: 2915-3353 bp Feature: RT Description: RVT-UG12 Note: UG12 RT Location: 2 915-3353 bp Feature: gene Location: 4255-4683 bp Feature: domain Description: AAA Location: 4267-4393 bp Feature: domain Description: AAA Location: 42 67-4393 bp Feature: gene Location: 4876-5379 bp Feature: domain Description: COG2932 Location: 4984-5371 bp Feature: domain Description: COG2 932 Location: 4984-5371 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PulG (pfam11773), YjbM (COG2357), RVT-UG12, AAA (TIGR00769), COG2932 (Phage repressor protein C, contains Cro/C1-type HTH and peptidase s24 domains )

Seq: JABSRO010000265.1 Pseudoalteromonas sp. isolate DT_88 DT-Pseudoalteromonas-1_scaffold_265, whole genome shotgun sequence (4912 bp)
Overview 1 RT 1: 409-4548 bp Neighborhood of RT #1 [409, 4548] RVT-GII GIIM RVT-GII GIIM Feature: gene Location: 409-1680 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 622-1243 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 622-1243 bp Feature: domain Description: GIIM Note: maturase Location: 1288-1510 bp Feature: domain Description: GIIM Note: maturase Location: 1288-1510 bp Feature: gene Location: 1651-1866 bp Feature: gene Location: 2101-2457 bp Feature: gene Location: 2525-3796 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2738-3359 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 273 8-3 3 59 bp Feature: domain Description: GIIM Note: maturase Location: 3404-3626 bp Feature: domain Description: GIIM Note: maturase Location: 3 404-3 626 bp Feature: gene Location: 4035-4232 bp Feature: gene Location: 4348-4548 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: JABSRO010000363.1 Pseudoalteromonas sp. isolate DT_88 DT-Pseudoalteromonas-1_scaffold_363, whole genome shotgun sequence (2425 bp)
Overview 1 RT 1: 163-2183 bp Neighborhood of RT #1 [163, 2353] RVT-GII GIIM Feature: gene Location: 163-351 bp Feature: gene Location: 793-993 bp Feature: gene Location: 1004-2353 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1283-1916 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1283-1916 bp Feature: domain Description: GIIM Note: maturase Location: 1958-2183 bp Feature: domain Description: GIIM Note: maturase Location: 1958-2183 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)