myRT

myRT report for GCA_013214075.1_ASM1321407v1

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Seq: JABSSI010000120.1 Saccharospirillaceae bacterium isolate DT_108 DT-Saccharospirillaceae-1_scaffold_120, whole genome shotgun sequence (15202 bp)
Overview 1 RT 1: 493-7389 bp Neighborhood of RT #1 [493, 7389] RVT-GII GIIM Mucin Feature: gene Location: 493-969 bp Feature: gene Location: 1595-2989 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1949-2609 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 949-2609 bp Feature: domain Description: GIIM Note: maturase Location: 2678-2900 bp Feature: domain Description: GIIM Note: maturase Location: 2678-2900 bp Feature: gene Location: 3380-5020 bp Feature: domain Description: Mucin Location: 3392-3665 bp Feature: domain Description: Mucin Location: 3392-3665 bp Feature: gene Location: 5248-7389 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), Mucin (pfam01456)

Seq: JABSSI010000189.1 Saccharospirillaceae bacterium isolate DT_108 DT-Saccharospirillaceae-1_scaffold_190, whole genome shotgun sequence (7689 bp)
Overview 1 RT 1: 821-4640 bp Neighborhood of RT #1 [821, 4714] DUF2157 OmpA GIIM RVT-GII DDE_Tnp_1_assoc Feature: gene Location: 821-1777 bp Feature: domain Description: DUF2157 Location: 884-1355 bp Feature: domain Description: DUF2 157 Location: 884-1355 bp Feature: domain Description: OmpA Location: 1400-1772 bp Feature: domain Description: OmpA Location: 1400-1772 bp Feature: gene Location: 1882-2202 bp Feature: domain Description: GIIM Note: maturase Location: 1903-2122 bp Feature: domain Description: GIIM Note: maturase Location: 1903-2 12 2 bp Feature: gene Location: 2215-3123 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2428-3073 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 42 8-3073 bp Feature: gene Location: 3803-3949 bp Feature: gene Location: 4505-4714 bp Feature: domain Description: DDE_Tnp_1_assoc Location: 4526-4640 bp Feature: domain Description: DDE_Tnp_1_assoc Location: 452 6-4640 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF2157 (pfam09925), OmpA (pfam00691), GIIM (pfam08388), RVT-GII, DDE_Tnp_1_assoc (pfam13808)

Seq: JABSSI010000215.1 Saccharospirillaceae bacterium isolate DT_108 DT-Saccharospirillaceae-1_scaffold_216, whole genome shotgun sequence (5961 bp)
Overview 1 RT 1: 3-4052 bp Neighborhood of RT #1 [3, 4135] RVT-UNC Exo_endo_phos_2 2OG-FeII_Oxy_2 PAF_acetylesterase_like Feature: gene Location: 3-914 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 573-909 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 573 -909 bp Feature: gene Location: 932-2380 bp Feature: domain Description: Exo_endo_phos_2 Location: 1634-1955 bp Feature: domain Description: Exo_endo_phos_2 Location: 163 4-1955 bp Feature: gene Location: 2387-4135 bp Feature: domain Description: 2OG-FeII_Oxy_2 Location: 3104-3503 bp Feature: domain Description: 2OG-FeII_Oxy_2 Location: 3 104-3 503 bp Feature: domain Description: PAF_acetylesterase_like Location: 3674-4052 bp Feature: domain Description: PAF_acetylesterase_like Location: 3 674-4052 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG2/RVT-GII/RVT-CRISPR(RVT-UNC), Exo_endo_phos_2 (pfam14529), 2OG-FeII_Oxy_2 (pfam13532), PAF_acetylesterase_like (cd01820)

Seq: JABSSI010000229.1 Saccharospirillaceae bacterium isolate DT_108 DT-Saccharospirillaceae-1_scaffold_230, whole genome shotgun sequence (4957 bp)
Overview 1 RT 1: 1-4764 bp Neighborhood of RT #1 [1, 4955] XthA XthA RVT-UNC sialate_O-acetylesterase_like2 Feature: gene Location: 1-129 bp Feature: gene Location: 480-4313 bp Feature: domain Description: XthA Location: 531-1005 bp Feature: domain Description: XthA Location: 531-1005 bp Feature: domain Description: XthA Location: 1221-1326 bp Feature: domain Description: XthA Location: 1221-1326 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 2415-2877 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 24 15-2877 bp Feature: gene Location: 4356-4955 bp Feature: domain Description: sialate_O-acetylesterase_like2 Location: 4470-4764 bp Feature: domain Description: sialate_O-acetylesterase_like2 Location: 4 4 70-4 764 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT XthA (COG0708), RVT-UG11/RVT-CRISPR/RVT-GII(RVT-UNC), sialate_O-acetylesterase_like2 (cd01828)

Seq: JABSSI010000239.1 Saccharospirillaceae bacterium isolate DT_108 DT-Saccharospirillaceae-1_scaffold_240, whole genome shotgun sequence (4251 bp)
Overview 1 RT 1: 161-4250 bp Neighborhood of RT #1 [161, 4250] L1-EN RVT-CRISPR-like Feature: gene Location: 161-370 bp Feature: gene Location: 449-3787 bp Feature: domain Description: L1-EN Location: 473-1106 bp Feature: domain Description: L1-EN Location: 473-1106 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 2213-2654 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 2213-265 4 bp Feature: gene Location: 3902-4045 bp Feature: gene Location: 4116-4250 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT L1-EN (cd09076), RVT-CRISPR

Seq: JABSSI010000250.1 Saccharospirillaceae bacterium isolate DT_108 DT-Saccharospirillaceae-1_scaffold_251, whole genome shotgun sequence (3825 bp)
Overview 1 RT 1: 3-1887 bp Neighborhood of RT #1 [3, 3317] RVT-UNC Feature: gene Location: 3-3317 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 1425-1887 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 1425-1887 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG28/RVT-GII/RVT-CRISPR(RVT-UNC)

Seq: JABSSI010000252.1 Saccharospirillaceae bacterium isolate DT_108 DT-Saccharospirillaceae-1_scaffold_253, whole genome shotgun sequence (3755 bp)
Overview 1 RT 1: 3-3596 bp Neighborhood of RT #1 [3, 3613] PHD XthA RVT-UNC 2OG-FeII_Oxy_2 Feature: gene Location: 3-2603 bp Feature: domain Description: PHD Location: 36-186 bp Feature: domain Description: PHD Location: 36-186 bp Feature: domain Description: XthA Location: 603-1053 bp Feature: domain Description: XthA Location: 603-1053 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 2160-2601 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 2160-2601 bp Feature: gene Location: 2984-3613 bp Feature: domain Description: 2OG-FeII_Oxy_2 Location: 3281-3596 bp Feature: domain Description: 2OG-FeII_Oxy_2 Location: 3281-3596 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHD (smart00249), XthA (COG0708), RVT-UG1/RVT-CRISPR/RVT-GII(RVT-UNC), 2OG-FeII_Oxy_2 (pfam13532)

Seq: JABSSI010000255.1 Saccharospirillaceae bacterium isolate DT_108 DT-Saccharospirillaceae-1_scaffold_256, whole genome shotgun sequence (3719 bp)
Overview 1 RT 1: 423-3718 bp Neighborhood of RT #1 [423, 3718] RVT-UNC Feature: gene Location: 423-2870 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 951-1425 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 951-1425 bp Feature: gene Location: 3038-3718 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII/RVT-CRISPR/RVT-UG11(RVT-UNC)

Seq: JABSSI010000256.1 Saccharospirillaceae bacterium isolate DT_108 DT-Saccharospirillaceae-1_scaffold_257, whole genome shotgun sequence (3686 bp)
Overview 1 RT 1: 3-1959 bp Neighborhood of RT #1 [3, 3386] R1-I-EN RVT-CRISPR-like Feature: gene Location: 3-3386 bp Feature: domain Description: R1-I-EN Location: 48-528 bp Feature: domain Description: R1-I-EN Location: 48-528 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 1521-1959 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 1521-19 59 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT R1-I-EN (cd09077), RVT-CRISPR

Seq: JABSSI010000282.1 Saccharospirillaceae bacterium isolate DT_108 DT-Saccharospirillaceae-1_scaffold_283, whole genome shotgun sequence (3035 bp)
Overview 1 RT 1: 126-1113 bp Neighborhood of RT #1 [126, 2549] RVT-UNC Feature: gene Location: 126-2549 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 672-1113 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 672-1113 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-CRISPR/RVT-GII/RVT-UG2(RVT-UNC)

Seq: JABSSI010000284.1 Saccharospirillaceae bacterium isolate DT_108 DT-Saccharospirillaceae-1_scaffold_285, whole genome shotgun sequence (2996 bp)
Overview 1 RT 1: 1-2975 bp Neighborhood of RT #1 [1, 2995] PHD RVT-GII Feature: gene Location: 1-162 bp Feature: gene Location: 644-775 bp Feature: gene Location: 800-2995 bp Feature: domain Description: PHD Location: 815-953 bp Feature: domain Description: PHD Location: 815-953 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2801-2975 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2801-2975 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHD (smart00249), RVT-GII

Seq: JABSSI010000286.1 Saccharospirillaceae bacterium isolate DT_108 DT-Saccharospirillaceae-1_scaffold_287, whole genome shotgun sequence (2717 bp)
Overview 1 RT 1: 137-1988 bp Neighborhood of RT #1 [137, 2716] RVT-GII Feature: gene Location: 137-2716 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1313-1988 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1313-1988 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: JABSSI010000287.1 Saccharospirillaceae bacterium isolate DT_108 DT-Saccharospirillaceae-1_scaffold_288, whole genome shotgun sequence (2935 bp)
Overview 1 RT 1: 656-2932 bp Neighborhood of RT #1 [656, 2932] RVT-UNC Feature: gene Location: 656-862 bp Feature: gene Location: 1351-2658 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 1405-1969 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 1405-1969 bp Feature: gene Location: 2777-2932 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG27/RVT-GII/RVT-CRISPR(RVT-UNC)

Seq: JABSSI010000298.1 Saccharospirillaceae bacterium isolate DT_108 DT-Saccharospirillaceae-1_scaffold_299, whole genome shotgun sequence (2673 bp)
Overview 1 RT 1: 2-1298 bp Neighborhood of RT #1 [2, 2671] RVT-CRISPR-like Feature: gene Location: 2-2671 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 866-1298 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 866-1298 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-CRISPR

Seq: JABSSI010000299.1 Saccharospirillaceae bacterium isolate DT_108 DT-Saccharospirillaceae-1_scaffold_300, whole genome shotgun sequence (2329 bp)
Overview 1 RT 1: 222-1479 bp Neighborhood of RT #1 [222, 2327] RVT-UNC Feature: gene Location: 222-2327 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 936-1479 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 936-1479 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG27/RVT-GII/RVT-CRISPR(RVT-UNC)

Seq: JABSSI010000300.1 Saccharospirillaceae bacterium isolate DT_108 DT-Saccharospirillaceae-1_scaffold_301, whole genome shotgun sequence (2656 bp)
Overview 1 RT 1: 2-2130 bp Neighborhood of RT #1 [2, 2130] RVT-UNC Feature: gene Location: 2-1888 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 113-554 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 113-554 bp Feature: gene Location: 1942-2130 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG11/RVT-CRISPR/RVT-GII(RVT-UNC)

Seq: JABSSI010000310.1 Saccharospirillaceae bacterium isolate DT_108 DT-Saccharospirillaceae-1_scaffold_311, whole genome shotgun sequence (2539 bp)
Overview 1 RT 1: 2-2336 bp Neighborhood of RT #1 [2, 2356] Exo_endo_phos_2 RVT-UNC Feature: gene Location: 2-2356 bp Feature: domain Description: Exo_endo_phos_2 Location: 482-803 bp Feature: domain Description: Exo_endo_phos_2 Location: 482-803 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 1817-2336 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 1817 -2336 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Exo_endo_phos_2 (pfam14529), RVT-UG10/RVT-GII/RVT-CRISPR(RVT-UNC)

Seq: JABSSI010000091.1 Saccharospirillaceae bacterium isolate DT_108 DT-Saccharospirillaceae-1_scaffold_91, whole genome shotgun sequence (20446 bp)
Overview 1 RT 1: 3-5619 bp Neighborhood of RT #1 [3, 8414] DUF5011 PKD DUF285 Liste_lipo_26 Liste_lipo_26 RVT-Retrons WGR_DNA_ligase Feature: gene Location: 3-1175 bp Feature: domain Description: DUF5011 Location: 174-381 bp Feature: domain Description: DUF5011 Location: 174-381 bp Feature: domain Description: PKD Location: 441-591 bp Feature: domain Description: PKD Location: 441-591 bp Feature: domain Description: DUF285 Location: 699-999 bp Feature: domain Description: DUF285 Location: 699-999 bp Feature: domain Description: Liste_lipo_26 Location: 1014-1080 bp Feature: domain Description: Liste_lipo_26 Location: 1014-1080 bp Feature: domain Description: Liste_lipo_26 Location: 1089-1161 bp Feature: domain Description: Liste_lipo_26 Location: 1089-1161 bp Feature: gene Location: 1658-3361 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2213-2834 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2213-2834 bp Feature: gene Location: 3749-5386 bp Feature: gene Location: 5376-8414 bp Feature: domain Description: WGR_DNA_ligase Location: 5391-5619 bp Feature: domain Description: WGR_DNA_ligase Location: 5391-5619 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF5011 (pfam16403), PKD (smart00089), DUF285 (pfam03382), Liste_lipo_26 (TIGR02167), RVT-Retrons, WGR_DNA_ligase (cd07998)