myRT

myRT report for GCA_013214205.1_ASM1321420v1

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Seq: JABSPQ010000183.1 Flavobacteriales bacterium isolate DT_38 DT-Flavobacteriales-1_scaffold_184, whole genome shotgun sequence (4110 bp)
Overview 1 RT 1: 121-3093 bp Neighborhood of RT #1 [121, 3101] RVT-DGRs Avd_like DUF1566 Feature: gene Location: 121-1362 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 358-1057 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 358-1 057 bp Feature: gene Location: 1693-2037 bp Feature: domain Description: Avd_like Location: 1720-2023 bp Feature: domain Description: Avd_like Location: 1 720-2023 bp Feature: gene Location: 2094-3101 bp Feature: domain Description: DUF1566 Location: 2733-3093 bp Feature: domain Description: DUF1 566 Location: 2733-3093 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, Avd_like (cd16376), DUF1566 (pfam07603)

Seq: JABSPQ010000227.1 Flavobacteriales bacterium isolate DT_38 DT-Flavobacteriales-1_scaffold_228, whole genome shotgun sequence (2579 bp)
Overview 1 RT 1: 32-2512 bp Neighborhood of RT #1 [32, 2512] RVT-GII GIIM Feature: gene Location: 32-1285 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 245-902 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 45-902 bp Feature: domain Description: GIIM Note: maturase Location: 986-1193 bp Feature: domain Description: GIIM Note: maturase Location: 986-1193 bp Feature: gene Location: 1300-1491 bp Feature: gene Location: 2324-2512 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: JABSPQ010000329.1 Flavobacteriales bacterium isolate DT_38 DT-Flavobacteriales-1_scaffold_330, whole genome shotgun sequence (2943 bp)
Overview 1 RT 1: 88-2552 bp Neighborhood of RT #1 [88, 2584] RVT-GII GIIM COG3177 Feature: gene Location: 88-1407 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 289-904 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 289-904 bp Feature: domain Description: GIIM Note: maturase Location: 976-1189 bp Feature: domain Description: GIIM Note: maturase Location: 976-1189 bp Feature: gene Location: 1460-2584 bp Feature: domain Description: COG3177 Location: 1538-2552 bp Feature: domain Description: COG3 177 Location: 153 8-2552 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), COG3177 (Fic family protein )

Seq: JABSPQ010000343.1 Flavobacteriales bacterium isolate DT_38 DT-Flavobacteriales-1_scaffold_344, whole genome shotgun sequence (4247 bp)
Overview 1 RT 1: 915-4195 bp Neighborhood of RT #1 [915, 4245] YwqK MORN_2 MORN_2 MORN_2 RVT-GII KOG4768 IstB_IS21 Feature: gene Location: 915-1325 bp Feature: gene Location: 1338-1964 bp Feature: domain Description: YwqK Location: 1404-1740 bp Feature: domain Description: YwqK Location: 14 04 -174 0 bp Feature: domain Description: MORN_2 Location: 1758-1791 bp Feature: domain Description: MORN_2 Location: 1758-1791 bp Feature: domain Description: MORN_2 Location: 1800-1851 bp Feature: domain Description: MORN_2 Location: 1800-1851 bp Feature: domain Description: MORN_2 Location: 1884-1929 bp Feature: domain Description: MORN_2 Location: 1884 -1929 bp Feature: gene Location: 2618-3853 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2825-3479 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2825-34 79 bp Feature: domain Description: KOG4768 Location: 3605-3788 bp Feature: domain Description: KOG4 768 Location: 3605-3788 bp Feature: gene Location: 4051-4245 bp Feature: domain Description: IstB_IS21 Location: 4057-4195 bp Feature: domain Description: IstB_IS21 Location: 4 057-4 195 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YwqK (COG2849), MORN_2 (pfam07661), RVT-GII, KOG4768 (KOG4768, Mitochondrial mRNA maturase ), IstB_IS21 (pfam01695)

Seq: JABSPQ010000346.1 Flavobacteriales bacterium isolate DT_38 DT-Flavobacteriales-1_scaffold_347, whole genome shotgun sequence (3558 bp)
Overview 1 RT 1: 1049-3461 bp Neighborhood of RT #1 [1049, 3556] DUF1566 Avd_like RVT-DGRs Feature: gene Location: 1049-2077 bp Feature: domain Description: DUF1566 Location: 1799-2015 bp Feature: domain Description: DUF15 66 Location: 1799-2015 bp Feature: gene Location: 2256-2639 bp Feature: domain Description: Avd_like Location: 2325-2631 bp Feature: domain Description: Avd_like Location: 2325 -2631 bp Feature: gene Location: 3008-3556 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 3242-3461 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 3242-3461 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1566 (pfam07603), Avd_like (cd16376), RVT-DGRs

Seq: JABSPQ010000354.1 Flavobacteriales bacterium isolate DT_38 DT-Flavobacteriales-1_scaffold_355, whole genome shotgun sequence (5189 bp)
Overview 1 RT 1: 1-4944 bp Neighborhood of RT #1 [1, 5186] RVT-GII INTN1_C_like SprB SprB P_proprotein Feature: gene Location: 1-168 bp Feature: gene Location: 303-458 bp Feature: gene Location: 1507-2301 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1513-1942 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1513-1942 bp Feature: domain Description: INTN1_C_like Location: 2038-2263 bp Feature: domain Description: INTN1_C_like Location: 2038-226 3 bp Feature: gene Location: 3087-5186 bp Feature: domain Description: SprB Location: 4152-4248 bp Feature: domain Description: SprB Location: 4152-4248 bp Feature: domain Description: SprB Location: 4407-4464 bp Feature: domain Description: SprB Location: 4407-446 4 bp Feature: domain Description: P_proprotein Location: 4623-4944 bp Feature: domain Description: P_proprotein Location: 46 23-4944 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, INTN1_C_like (cd01185), SprB (pfam13573), P_proprotein (pfam01483)

Seq: JABSPQ010000057.1 Flavobacteriales bacterium isolate DT_38 DT-Flavobacteriales-1_scaffold_57, whole genome shotgun sequence (6217 bp)
Overview 1 RT 1: 2-2626 bp Neighborhood of RT #1 [2, 2673] RVT-GII HTH_23 COG4584 IstB_IS21 Feature: gene Location: 2-202 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11-176 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11-17 6 bp Feature: gene Location: 366-1919 bp Feature: domain Description: HTH_23 Location: 402-504 bp Feature: domain Description: HTH_23 Location: 402-504 bp Feature: domain Description: COG4584 Location: 663-1209 bp Feature: domain Description: COG4584 Location: 663-1209 bp Feature: gene Location: 1846-2673 bp Feature: domain Description: IstB_IS21 Location: 2101-2626 bp Feature: domain Description: IstB_IS21 Location: 2101-2626 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, HTH_23 (pfam13384), COG4584 (Transposase ), IstB_IS21 (pfam01695)

Seq: JABSPQ010000068.1 Flavobacteriales bacterium isolate DT_38 DT-Flavobacteriales-1_scaffold_68, whole genome shotgun sequence (3182 bp)
Overview 1 RT 1: 1-2931 bp Neighborhood of RT #1 [1, 2931] NAGPA RVT-GII GIIM RVT-GII Feature: gene Location: 1-1374 bp Feature: domain Description: NAGPA Location: 922-1291 bp Feature: domain Description: NAGPA Location: 922-1291 bp Feature: gene Location: 1379-2479 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1391-1910 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1391-1910 bp Feature: domain Description: GIIM Note: maturase Location: 1994-2189 bp Feature: domain Description: GIIM Note: maturase Location: 1994-218 9 bp Feature: gene Location: 2501-2758 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2696-2750 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2696-2750 bp Feature: gene Location: 2800-2931 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT NAGPA (pfam09992), RVT-GII, GIIM (pfam08388)