myRT

myRT report for GCA_013214685.1_ASM1321468v1

Download annotations/find similar RTs

Seq: JABSRW010000155.1 Psychroserpens sp. isolate DT_96 DT-Psychroserpens-1_scaffold_155, whole genome shotgun sequence (1542 bp)
Overview 1 RT 1: 260-1404 bp Neighborhood of RT #1 [260, 1404] RVT-UNC Feature: gene Location: 260-661 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 389-644 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 389-644 bp Feature: gene Location: 663-1016 bp Feature: gene Location: 1063-1404 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG2/RVT-GII/RVT-DGRs/RVT-CRISPR(RVT-UNC)

Seq: JABSRW010000165.1 Psychroserpens sp. isolate DT_96 DT-Psychroserpens-1_scaffold_165, whole genome shotgun sequence (2013 bp)
Overview 1 RT 1: 113-1933 bp Neighborhood of RT #1 [113, 2010] DDE_Tnp_IS66 RVT-GII Feature: gene Location: 113-1552 bp Feature: domain Description: DDE_Tnp_IS66 Location: 605-1436 bp Feature: domain Description: DDE_Tnp_IS66 Location: 605-1436 bp Feature: gene Location: 1720-2010 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1726-1933 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 172 6-1933 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_IS66 (pfam03050), RVT-GII

Seq: JABSRW010000404.1 Psychroserpens sp. isolate DT_96 DT-Psychroserpens-1_scaffold_404, whole genome shotgun sequence (1544 bp)
Overview 1 RT 1: 272-941 bp Neighborhood of RT #1 [272, 1543] RVT-GII Feature: gene Location: 272-1543 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 293-941 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 293 -941 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: JABSRW010000547.1 Psychroserpens sp. isolate DT_96 DT-Psychroserpens-1_scaffold_547, whole genome shotgun sequence (1586 bp)
Overview 1 RT 1: 3-1359 bp Neighborhood of RT #1 [3, 1520] RVT-UNC Feature: gene Location: 3-1520 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 720-1359 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 720-1359 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG11/RVT-GII/RVT-CRISPR(RVT-UNC)

Seq: JABSRW010000578.1 Psychroserpens sp. isolate DT_96 DT-Psychroserpens-1_scaffold_578, whole genome shotgun sequence (5034 bp)
Overview 1 RT 1: 731-4168 bp Neighborhood of RT #1 [731, 4434] retropepsin_like_LTR_2 RVT-UNC RNase_HI_RT_Ty3 Integrase_H2C2 rve Feature: gene Location: 731-2878 bp Feature: domain Description: retropepsin_like_LTR_2 Location: 1718-1985 bp Feature: domain Description: retropepsin_like_LTR_2 Location: 1718-1985 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 2513-2675 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 25 13-2675 bp Feature: gene Location: 3036-3944 bp Feature: domain Description: RNase_HI_RT_Ty3 Location: 3039-3366 bp Feature: domain Description: RNase_HI_RT_Ty3 Location: 3039-3366 bp Feature: domain Description: Integrase_H2C2 Location: 3645-3798 bp Feature: domain Description: Integrase_H2C2 Location: 3645 -3798 bp Feature: gene Location: 3913-4434 bp Feature: domain Description: rve Location: 3916-4168 bp Feature: domain Description: rve Location: 3916-4168 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT retropepsin_like_LTR_2 (cd05484), RVT-UG17/RVT-UG25/RVT-DGRs/RVT-GII(RVT-UNC), RNase_HI_RT_Ty3 (cd09274), Integrase_H2C2 (pfam17921), rve (pfam00665)

Seq: JABSRW010000677.1 Psychroserpens sp. isolate DT_96 DT-Psychroserpens-1_scaffold_677, whole genome shotgun sequence (4565 bp)
Overview 1 RT 1: 126-3495 bp Neighborhood of RT #1 [126, 4199] AIR1 retropepsin_like_LTR_2 RVT-DGRs RNase_HI_RT_Ty3 Integrase_H2C2 rve Feature: gene Location: 126-4199 bp Feature: domain Description: AIR1 Location: 738-903 bp Feature: domain Description: AIR1 Location: 738-903 bp Feature: domain Description: retropepsin_like_LTR_2 Location: 1026-1287 bp Feature: domain Description: retropepsin_like_LTR_2 Location: 1026 -1287 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1845-2052 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1845-2052 bp Feature: domain Description: RNase_HI_RT_Ty3 Location: 2340-2709 bp Feature: domain Description: RNase_HI_RT_Ty3 Location: 2340-2709 bp Feature: domain Description: Integrase_H2C2 Location: 2967-3129 bp Feature: domain Description: Integrase_H2C2 Location: 296 7-3129 bp Feature: domain Description: rve Location: 3177-3495 bp Feature: domain Description: rve Location: 3177-3495 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AIR1 (COG5082), retropepsin_like_LTR_2 (cd05484), RVT-DGRs, RNase_HI_RT_Ty3 (cd09274), Integrase_H2C2 (pfam17921), rve (pfam00665)