myRT

myRT report for GCA_013214905.1_ASM1321490v1

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Seq: JABSRV010000020.1 Psychrobium sp. isolate DT_95 DT-Psychrobium-1_scaffold_20, whole genome shotgun sequence (28847 bp)
Overview 1 RT 1: 3-6581 bp Neighborhood of RT #1 [3, 6589] PRK00566 RVT-GII GIIM Scramblase Feature: gene Location: 3-3200 bp Feature: domain Description: PRK00566 Location: 6-3132 bp Feature: domain Description: PRK00566 Location: 6-31 32 bp Feature: gene Location: 3214-3537 bp Feature: gene Location: 4008-5273 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4221-4839 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4221 -4839 bp Feature: domain Description: GIIM Note: maturase Location: 4887-5097 bp Feature: domain Description: GIIM Note: maturase Location: 4887-5097 bp Feature: gene Location: 5552-5830 bp Feature: gene Location: 5993-6589 bp Feature: domain Description: Scramblase Location: 5999-6581 bp Feature: domain Description: Scramblase Location: 5999-6581 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK00566 (DNA-directed RNA polymerase subunit beta'; Provisional), RVT-GII, GIIM (pfam08388), Scramblase (pfam03803)

Seq: JABSRV010000270.1 Psychrobium sp. isolate DT_95 DT-Psychrobium-1_scaffold_270, whole genome shotgun sequence (4700 bp)
Overview 1 RT 1: 3-4091 bp Neighborhood of RT #1 [3, 4091] VCBS_repeat VCBS_repeat VCBS_repeat VCBS_repeat VCBS_repeat RVT-GII Feature: gene Location: 3-2249 bp Feature: domain Description: VCBS_repeat Location: 627-849 bp Feature: domain Description: VCBS_repeat Location: 62 7-849 bp Feature: domain Description: VCBS_repeat Location: 918-1203 bp Feature: domain Description: VCBS_repeat Location: 918-12 03 bp Feature: domain Description: VCBS_repeat Location: 1251-1539 bp Feature: domain Description: VCBS_repeat Location: 12 51-1539 bp Feature: domain Description: VCBS_repeat Location: 1578-1860 bp Feature: domain Description: VCBS_repeat Location: 1578-1860 bp Feature: domain Description: VCBS_repeat Location: 1875-2163 bp Feature: domain Description: VCBS_repeat Location: 1875-2 163 bp Feature: gene Location: 2906-3211 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2930-3182 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 930-3182 bp Feature: gene Location: 3390-3536 bp Feature: gene Location: 3816-4091 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, VCBS_repeat (TIGR01965)